Vibrio cholerae O1 MJ-1236: VCD_002725
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Entry
VCD_002725 CDS
T00903
Name
(GenBank) response regulator VieA
KO
K13246
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VCD_002725
Enzymes [BR:
vcj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
VCD_002725
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Gene cluster
GFIT
Motif
Pfam:
EAL
Response_reg
GerE
Sigma70_r4_2
Sigma70_r4
HTH_23
Sigma70_ECF
Terminase_5
Motif
Other DBs
NCBI-ProteinID:
ACQ60889
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All DBs
Position
1:1884513..1886258
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AA seq
581 aa
AA seq
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MIVEDDRIQATSLKLKLRQLGLDDVILAENGFAALELCNKVGIDLMFCDIRMPQMDGISL
LSQLSLQAPKLGVVILSAVEDTILELTHNMCSLAGFAYVDRLPKPYEVEDLQRVVEGFQK
QTEPETSHKPAITLTCDEIEQAFLHDHIFNYYQPQFDFRSGAMVGVEALVRYEHPTHGML
SPAVFLPLIEQCGLHEKLFLTVLEKSVSALASIGADLQLSVNISQRNLQHSICDPILAIC
ERYGFPASKLTLEMTEHEVYNGTPTSLANLARLRMYGVGLSIDDFGTGYASLGQLAQLPF
TELKIDRSFVHDLATNYKHQQLTNMCLLLAQSLGLHCVVEGVENEETWQYLRQLGVDTCQ
GYYAAKPMPIAQLSELYTKNRRQCLGCQSMDDGWQILLVDNHMLSATALQKVLNKEENVS
KVFVAQDIEQTLHKLRDLPINLLVVESRFLSTISPAAFHELLEPYYRGALLVLHDGLTAE
AQEDEPKAIVVKANTLMETSSRILLQAQQSNVRPQAQQEELAQLSERELTVAKMLVEGLT
NKEIALQLDINQKTVSTYKTRIMTKLGIKSAMELVRFVTLK
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgatagtagaagatgatcgaattcaggcgactagcctgaagctcaagctaagacagctt
gggttggatgacgtcatcttggctgaaaacggatttgctgccttagaactgtgtaacaaa
gtgggtatcgatttgatgttttgcgatattcgaatgccgcagatggatgggatcagtttg
ttatcacaactgagtttacaggcacctaagctaggtgtggtgatactcagcgctgtggaa
gatacgattcttgagttaacccacaacatgtgtagtttggctggatttgcttatgttgat
cgcctacctaagccctacgaagtggaggatttacagcgtgttgtcgaggggtttcaaaag
caaacggagcccgaaaccagtcacaaacctgcaatcacgctaacctgtgacgagattgaa
caagcttttctgcacgaccatatttttaattactatcaaccacagtttgattttcgcagt
ggggcgatggtcggcgttgaagcgctagtacgttacgagcacccaactcatggcatgtta
agcccagcagtgtttctgcctttaattgagcagtgtggcttgcatgagaaactcttcctt
accgtattagaaaagtcggtctctgcactggccagtattggtgctgacttgcagctttcc
gtcaacatcagccagcgcaacttgcaacactcaatctgtgatcccattctcgccatctgt
gagcggtatggttttcccgcaagcaaactgactctagagatgacggagcatgaggtgtac
aacggaaccccgacctcattggccaaccttgctcgactgcgaatgtatggcgttgggcta
tcgattgatgattttggtacgggttacgcgtcattaggtcaactggctcaactgcctttt
acggaactcaagattgatcgcagctttgtgcatgacttggcaaccaactacaaacaccaa
caattgaccaatatgtgtttgttgctggctcaatctttggggttgcactgcgtcgtcgaa
ggggtagagaacgaagaaacatggcaatacttgcgtcaacttggggtagatacttgccaa
ggttactacgccgctaagcccatgccgattgctcagttgagcgaactttacactaaaaat
cgtcgtcagtgtttaggttgtcaaagcatggatgatggctggcaaatcttgctggtggat
aaccatatgctcagcgccacggcattacaaaaagtgctcaataaagaagagaacgtcagc
aaggtgtttgtggcgcaagatattgagcagacgctgcacaaactgcgcgatttaccgatc
aacctgctggtcgtcgaaagtcggtttttatcgacaatcagtcctgcggcatttcacgag
ttgcttgagccttactatcgaggggcgctcttggtgctgcatgatggattaaccgctgaa
gctcaagaggatgagcccaaagccatcgtcgtcaaagcgaatactttgatggaaaccagc
tcccggatcttactgcaagcgcagcagagcaatgtgcgcccacaggcgcaacaagaagag
cttgctcagctttctgagcgagagttgacggttgcgaaaatgttagttgaaggtctaacg
aataaagaaatcgccttacaactcgatatcaaccaaaaaacagtaagcacttacaagact
aggattatgaccaagttagggattaaatcggccatggaattggtgcgttttgtaacatta
aaatag
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