Vibrio cholerae O1 MJ-1236: VCD_002727
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Entry
VCD_002727 CDS
T00903
Name
(GenBank) microbial collagenase secreted
KO
K01387
microbial collagenase [EC:
3.4.24.3
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
vcj01002
]
VCD_002727
09183 Protein families: signaling and cellular processes
02042 Bacterial toxins [BR:
vcj02042
]
VCD_002727
Enzymes [BR:
vcj01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.3 microbial collagenase
VCD_002727
Peptidases and inhibitors [BR:
vcj01002
]
Metallo peptidases
Family M9
VCD_002727
Bacterial toxins [BR:
vcj02042
]
Toxins that damage the extracellular matrix
Hyaluronidases/Collagenases
VCD_002727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M9
Peptidase_M9_N
PPC
SeqA_N
Motif
Other DBs
NCBI-ProteinID:
ACQ60891
LinkDB
All DBs
Position
1:complement(1887965..1890430)
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AA seq
821 aa
AA seq
DB search
MSFQQRIQHHPIAWACVIAGLSYSSYSQAACEIQDLQPARDLPAQIAVATQACYNSWFYA
PTATLDNLYSEASLAHLQTVLDAEIARYTGEAQQARRLENYGEFIRAAYYVRYNAGREPY
SQALSQRFAQSIDRFLRHPHAFDQGREQVGAMKSLSLMVDNVKQLPLTMDAMILALHRFN
RETAQDTQWVDGLNNLFRAMSGHVGNSEFYRYLAANTQHIDTLYRFALDNEWALETDAEF
LVYNALRETGRLLISPDAITKQKARHVMRQVIARYPLGSKHDKLWLAAVEMLHYYAPEVL
QQLGIDLDAAKRDLAARILPNRFECQGPAIIRSQDLSDAQAAQACDVLDKKEQDFHQVAN
TGLAPVADDYNTRVEVVVFANNSSYVNYSSFLFGNTTDNGGQYLEGNPADQNNQARFVAY
RYANDADLSILNLEHEYTHYLDARFNQYGSFSDNLAHGHIVWWLEGFAEYMHYKQGYQAA
VKLISQGKLSLSDVFATTYSNDTNRIYRWGYLAVRFMLEKHPQDVESLLALSRTGQFDQW
AQSVKLLGERYNTEFSAWLDTLQRDNPDNPDNPDNPDNPDNPDNPDNPEQPNPEPNAVTQ
LAANSSLTLTGKAYSEHLFYVDVPEYSREFHVQISGEGDADLYMSYQQVAHYYDYQVTEF
TYGSNEQITFKPEQNGYIKPGRYYLSVTGRADYSAVILNTHLVTEQPNEQPTIKDDLAPV
LLEAGNSQSLTVHRQRYVAIYVPKGVSEVQVWLTASEQNRGNVDLFAAKAYWPTREQFEH
ASTGAGSHEYLRIPVTQEGYVHFSLNAQQLGDTVEMVAYFD
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttttcaacaacgtatccaacatcaccccattgcttgggcgtgcgtcatcgctggt
ctttcttactcctcctattcacaagcagcttgtgagatacaagatttacagcccgcgcgc
gatcttcctgcgcaaattgccgtggctacacaagcttgttacaactcatggttttacgca
ccaacggcaaccttggataacctctatagcgaagcttctctagcgcatttacaaactgtg
ctcgatgctgaaattgctcgctatactggtgaagcgcagcaagctcgtcgcttggaaaac
tatggtgagttcattcgcgcagcgtattacgtgcgttataacgctgggcgtgaaccttat
tctcaagcactcagtcaacgctttgctcaatcgatcgaccgctttttacgtcatccgcat
gcttttgaccaaggccgtgaacaggtgggcgcaatgaagagcctaagtttaatggtggat
aacgttaagcagttaccgctcactatggatgcgatgatcttagctctgcaccgcttcaat
cgagaaacggcgcaagatacacaatgggtcgatggtttaaataacttattccgtgcgatg
tctggccatgtgggtaactcggagttttaccgctacttagccgccaacactcaacatatt
gataccttgtatcgattcgctctggacaatgagtgggcattagaaaccgacgctgagttt
ttggtttacaacgctctgcgtgaaactggccgcttattgattagcccagatgccattacc
aagcaaaaggctcgtcatgtgatgcgacaagtgattgctcgctatcctttagggagtaaa
cacgacaaattgtggttagctgccgttgagatgttgcattattacgcacctgaggtgctg
caacagctcggtatcgatcttgatgcagcgaagcgcgatttagccgcgcgcattttgcca
aaccgctttgaatgccaaggccctgccattattcgctcgcaagatctttccgatgcgcaa
gccgcgcaagcctgtgacgtattggataaaaaagagcaagattttcaccaagtggcaaat
acgggattggcaccggtcgctgatgattacaacactcgcgttgaggtggtggtgtttgcc
aataacagcagctatgtcaattactcctcgtttttatttggcaataccaccgacaatggc
gggcagtatttagaaggcaaccctgcggatcaaaacaatcaagcccgttttgtcgcctat
cgttatgccaatgatgcggatttgtcgattctcaatttagagcatgagtacactcattat
ctggacgcgcgcttcaaccagtatggttcgttcagtgataacttagcccatggtcatatt
gtgtggtggttagaaggtttcgcggaatatatgcattataagcagggctaccaagcggcg
gttaagctgatttctcaaggtaaattgagcctttctgatgtgtttgccaccacctactcg
aatgatacgaaccgcatttatcgctggggctacttagcggtacgctttatgttggaaaag
catccacaagacgtggaaagcttgctggcactctctcgtactgggcagtttgatcagtgg
gcacagagtgtcaaattactgggtgaacgctataacaccgagttttcggcgtggctggat
acattgcaacgcgataatccagataatccagataatccagataatccagataatccagat
aatccagataatccagataatccagaacagcctaacccagaacccaatgcggtcactcag
ttagcggccaattcgtccttaacactgacaggaaaggcgtacagcgagcatctgttctat
gtggatgtgccagagtacagccgagagttccacgttcagatctccggggagggagatgcc
gatctgtacatgagctaccagcaggttgcccattactatgattatcaggtaacggaattt
acctatggcagcaacgagcaaattaccttcaaacctgagcagaatggttacatcaaaccc
ggacgctactatttaagtgtgacaggacgtgcggattactcagcagtcatcctcaacaca
cacctagtcactgaacagcctaatgagcaaccgactatcaaagatgatcttgctcctgtg
cttttagaagcgggtaacagtcaaagccttaccgtgcatcgacaacgttacgtcgccatc
tacgtgccaaaaggcgtcagtgaagtacaagtatggctcaccgcttcagaacaaaaccga
ggcaatgtcgatctgtttgcagcaaaagcgtattggccaactcgagagcagtttgagcac
gcctcaactggtgcgggcagtcatgagtatttgcgtattcctgtgacacaagaaggctat
gtgcacttttcgttaaacgcacaacaactcggcgacacggtcgaaatggtggcctatttc
gactga
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