Vibrio cholerae O1 MJ-1236: VCD_003060
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Entry
VCD_003060 CDS
T00903
Name
(GenBank) DNA polymerase III epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj03030
DNA replication
vcj03430
Mismatch repair
vcj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VCD_003060
03430 Mismatch repair
VCD_003060
03440 Homologous recombination
VCD_003060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcj03032
]
VCD_003060
03400 DNA repair and recombination proteins [BR:
vcj03400
]
VCD_003060
Enzymes [BR:
vcj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VCD_003060
DNA replication proteins [BR:
vcj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VCD_003060
DNA repair and recombination proteins [BR:
vcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VCD_003060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
CAF1
Motif
Other DBs
NCBI-ProteinID:
ACQ61220
LinkDB
All DBs
Position
1:2294457..2295167
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AA seq
236 aa
AA seq
DB search
MSAMFDSAIYWPARFAHLAQQARQTHLQRFYAQPLVEGSTPIHQCSLVALDFETTGLNAE
QDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSELQHAQAPEQVLKE
LLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQLLDKQRSLWQRIA
RRPLPSIRLGQSRMRYHLPPYSPHHALTDAIATAELFQAQCAHHLPPHTAIQSLWL
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgccatgttcgattctgcgatttactggcccgctcgatttgctcacttagcccag
caggctcggcaaacccatttacagcgcttttatgctcaacctctggttgaaggctcaaca
ccgattcatcagtgctcactggttgccctcgattttgaaacaacgggactgaatgccgag
caagatgccattgtgagtatcggtttagtgccttttactactcaacggatttttcttagt
caagctcggtattggttagtaaaaccctctcaaccgcttgaagatgagtcgatagtgttc
catgggatcacgcactccgagttgcagcatgcgcaagctccagaacaggtgttgaaggaa
ttactcgaggcgctgcacggcaagattgtcgtcgtacactttaggcatattgaacgtgat
tttttgcgccagattagcctgaatatatggggcgaggcgatcgagtttcccgtgttggat
acattagaaattgaacgtcagttactggataagcaacgctcgctgtggcaacggattgca
cgtcgacctttaccctcaatacgccttgggcaatcacggatgcgttatcacttaccgccc
tactcacctcaccatgcgctgacggatgccattgcgaccgcagaactttttcaagcgcag
tgcgcgcaccatctcccaccccacaccgctattcagtctttgtggctttag
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