Vibrio cholerae O1 MJ-1236: VCD_003320
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Entry
VCD_003320 CDS
T00903
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VCD_003320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcj03400
]
VCD_003320
DNA repair and recombination proteins [BR:
vcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VCD_003320
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VCD_003320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
UvrD-helicase
eIF3_p135
Motif
Other DBs
NCBI-ProteinID:
ACQ61480
LinkDB
All DBs
Position
1:complement(2573983..2576013)
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AA seq
676 aa
AA seq
DB search
MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPT
IILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIE
QMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQ
YSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLA
RFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNE
LGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKE
TLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLL
DPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSD
IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTM
GRAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMEL
GDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQ
KRDEIHQLRQQFIANS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagcatttgaattggtttcagactatcaacctgctggtgatcagcctaccgcg
attaagcaattgctggaggggttggaagcgggcttggctcatcaaactctgcttggggta
acgggttcaggtaaaacctttacgttagcgaatgtgattgccaccgcgcagcgtcccacc
attatacttgcgcctaataagacactggcggctcaattgtacggcgaaatgaaagccttt
tttcccaacaatgcggtggagtatttcgtttcttactacgactactatcaaccagaagcc
tatgtgccgaccacggatacttttattgaaaaagacgcgtccgtgaacgctcatattgaa
cagatgcgcttatcggccactaaagccttgcttgagcgcaaagatgcggtgattgtcgct
tcagtttctgccatatacggtctgggcgatccggactcttatctaaaaatgatgctccat
ttacgtcgtggtgatgtgattaatcaacgtgacatgttgcgtcgtttggcggagctgcaa
tattcacgcaatgatatggcatttgagcgcggtcagttccgggtacgcggagaagtgatt
gatattttccctgccgaatcggatcaagaagctgttcgagtggaaatgtttgatgatgaa
atcgaatgcatcagtttatttgatccgctgaccggcgtgattacgtcacgcgatttagct
cgctttacgatttaccccaaaactcactatgtcaccccacgcgagcgcattcttgaggcg
atagagcagattaagagcgagttgcaggtccgccgccaatatttgctggataacaataaa
ttgctggaagagcagcggatttctcagcgaactcagtttgatattgagatgatgaacgaa
ttgggattctgctcagggatcgaaaactactcacgttacctaagtggtcgtgcagaaggc
gagccgcctccaacgctctttgattacttgcctcacgatggcttgctgatcatcgatgaa
tcacacgtcaccgtgccgcaaattggcgcgatgtttaaaggcgatcgttcacgaaaagaa
acgctggtggagttcggttttcgcctaccttcagccttagataaccgcccacttaagttt
gatgaatttgaagcattagcaccgcaaaccatctttgtgtcagcaacaccgagtgaatat
gagctcactaaatcgggtggtgaagtggcggagcaggtggtgcgtccaaccggtttgtta
gacccgatcattgaagtacgtccggtcgccactcaggtggatgatctgctttctgaagcg
cgcattcgcgcggccaatgatgagcggattttggtgactaccttaaccaaacgcatggcc
gaggacttaaccgaatatctgcatgagcatggtgtgaaagttcgctatttacactcggac
attgataccgtcgaacgggtagaaattattcgtgatttacgattaggcgtatttgatgtg
ttggtggggatcaacttgctacgtgaaggtctggacatgccagaggtcgctttagtggcg
attttggatgctgataaagaaggctttttgcgttccgagcgttcacttatccagaccatg
ggtcgtgcagcacgtaacgtgaatggtaaagcaattttgtatgccgactcgatcaccaaa
tccatgcgtaaagcgatcgatgaaaccgagcgtcgccgtgagaagcagctggcttataat
gagcagcgcggtatcacgccgcagcctttaaaacgcagcgttaaagacatcatggagctg
ggcgatattgcgaaatcgcgcaaacagaagaacagcaaagtggtgccattggcgaaagta
gctgaagaatcggcggcttaccaagtgttgactcctcagcagcttgaaaaagagatcagt
aaattagaagccgcaatgtatcagcatgcgcagaacttagagtttgagttagcggcgcaa
aaacgtgatgaaattcatcagttgcgtcagcagtttatcgccaatagttag
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integrated database retrieval system
