Vibrio cholerae O1 MJ-1236: VCD_003659
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Entry
VCD_003659 CDS
T00903
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vcj03009
]
VCD_003659
Enzymes [BR:
vcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VCD_003659
Ribosome biogenesis [BR:
vcj03009
]
Prokaryotic type
rRNA helicases
VCD_003659
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
UvrD-helicase
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACQ61815
LinkDB
All DBs
Position
1:2956954..2958225
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AA seq
423 aa
AA seq
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MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP
ALQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHAD
ILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWR
KQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKK
ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL
LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR
VERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAA
TKA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
gtgattaaaacctttgccgacctcgaactcgatccaattttgcttgaagcgatcgaagaa
atgggctttagccgcccaacccaagttcaggctgaagcaatcccgcaagcactggatggt
cgcgatgtcttagcctcagccccaacaggcacgggtaaaacggcggctttcgtgatccca
gcgctgcaatatttgctcgatttcccacgccgtaaagcgggtcctgcgcggattttgatc
ctcactccgactcgtgaactggcgatgcaagtagctgaacaagcacaggcgctggccaaa
aatactcgtctgaacattttcaccattaccggtggtgttcagtaccaagagcacgccgat
attctggccacgactcaagatatcgtggtcgccacaccaggacgtctgctggaatacatt
gacgccgagcgctttgattgtcgtgcgattgagtggctgatcctcgatgaagcggaccgc
atgttggacatgggctttggcccaaccgttgatcgcctttcgaccgagtgtcgctggcgt
aaacagacactgctcttttcagcaaccctagaaggccgcggtgtggaaggctttactgcc
gatctgttaaaagatcccgcccatgtcgatgccgagccaccccgtcgtgagcgtaagaaa
atttcgcagtggtaccaccgcgccgatgatatgccacacaaagtggaactgctgaaaaag
atcctaaccgagcaagctgaacgttctatcgtgtttttgaaaactcgtgagcgtctcgca
gacctgcgtgctgagctggagaaagcccagatcccttgtgcttggattcaaggtgaaatg
ccgcaagatcgccgtaacaatgcgatcagccgtttccgtgaaggcgatgtcaatattctg
ctggctaccgatgtggcggcgcgtggtattgatgtgccagacattagccatgtgatcaac
tttgacttgccacgcagtgctgacgtttacctacaccgtattggtcgcaccggacgtgca
gggaaaaaaggtattgctatttcactggttgaagcgcacgaccagccgatgatggcgcgt
gttgaacgttacatcaaagaagaagtcaaagagcgctttattgatggtttacgccctaag
cacaaaaagcctgtgtttaagaaaaagaaaaaagacatcaagaaaaccgcagacaaaggc
gcggtgaaaaagaaaaccaccagcaagccaaaagcaaaagcgaccaagaagaaagccgcg
accaaagcctaa
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