Vibrio cholerae O1 MJ-1236: VCD_003764
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Entry
VCD_003764 CDS
T00903
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vcj
Vibrio cholerae O1 MJ-1236
Pathway
vcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VCD_003764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcj03019
]
VCD_003764
03016 Transfer RNA biogenesis [BR:
vcj03016
]
VCD_003764
Enzymes [BR:
vcj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VCD_003764
Messenger RNA biogenesis [BR:
vcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VCD_003764
Transfer RNA biogenesis [BR:
vcj03016
]
Prokaryotic type
tRNA degradation factors
VCD_003764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
S1_RRP5
aRib
KH_2
KH_SLS1_2
KH-I_KHDC4-BBP
DUF3016
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
ACQ61920
LinkDB
All DBs
Position
1:complement(3077545..3079674)
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AA seq
709 aa
AA seq
DB search
MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS
VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV
AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN
TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAALLAENEALDTKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ
RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE
EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS
DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ
AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA
TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV
EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSDAAAAEVAPQAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaaaaccagtagtaaaaacgtttcagtacggtaaccacaccgttactctcgaa
acgggtgtaatggctcgccaagcaacggcagcagtaatggctaccatggatgacactgcg
gtgtttgtctctgtggtcggtaagaaagaagcggtagtgggtcaagatttcttccctctg
actgtaaactaccaagagcgtacttacgcggcaggtaaaatccctggcggtttctttaag
cgcgaaggtcgtccttctgaaggcgaaacgctgattgctcgtctgattgaccgtccaatt
cgtccgctgttccctgatggtttcactaacgaagtgcaagtgatcgcgactgtggtttca
gtaaacccagacgtgcaacctgacatcatctcgatgatcggtacttctgcagcactggcg
atttctggactcccattcaatggtccaatcggtgcggctcgcgtaggtcacattgatggt
caattggttctgaacccaagtgaaaaagagctgaaacagtctcgtttggatctggtggtt
gcgggtactgacaacgcagtactgatggtggaatcagaagcacaaattctgactgaagaa
gagatgctggctgccgttgtgtttggtcacgatcaacaacaagccgtgatcaaagcaatc
aatgaattcgcagcggaagttgcaacaccagcatgggaatgggttgcaccagccgagaac
actgagctgaaagcgaaagtggctgctctggcagaaactcgtttggtggaagcgtaccaa
atcactgagaaaatggcgcgttatgatcgtatccatgaaatcagtgcagaagtcacggcg
gctctgctggctgaaaacgaagctttagacaccaaagaaattcacaccattttccacgat
ctggaaaaaaccgttgttcgtcgcagcatcatcgcgggtaacccacgtatcgatggccgt
gaaaaagacatggttcgtgctctggacgttcgtactggcgttctgccacgtactcacggc
tctgctctgttcacacgtggtgaaactcaggctctggttaccgcaactctaggcactcag
cgtgatgcgcaaatcatcgatgagctgactggcgagaagaaagatcacttcctactgcac
tacaacttccctccatactgtgtgggtgaaacgggttttgtgggttctcctaagcgtcgc
gaaatcggtcacggccgtttggcgaagcgtggtattgctgcggttatgccatcaccagaa
gagttcccgtacacagtacgtgtcgtttctgaaatcacggaatctaacggttcatcttca
atggcttctgtgtgtggttcatcgcttgctctgatggatgccggtgttccaatcaaggct
tctgttgcgggtatcgcaatgggtctggtgaaagaagaaaatgatttcgtggttctgtct
gacatcctaggtgatgaagatcaccttggcgacatggactttaaagtcgcgggtaccgcg
acaggtgttactgcactgcagatggacatcaagatcgaaggtatcaccaaagagatcatg
caaatcgctctgaaccaagcgaaaggtgctcgtctacacattctgtctgtgatggatcaa
gcgatctctgcagcgcgtagcgatatctctgaatttgcgccacgtatccacacgatgaag
atcagcgttgagaagatcaaagacgtgatcggtaaaggcggtgcggtaattcgtcagttg
acggaagaaacgggtaccaccatcgagatcgaagatgacggcacgatcaagattgctgcg
actgacggcgatcaagcgaaagaagcgatccgccgtattcaagagatcaccgccgaagtt
gaagtgggcgtgatctacactggtaaagtagctcgtttggcagactttggtgcgtttgta
acgattcttcctggtaaagatggtctagtacacatctctcaaatcgctgacaagcgcgta
gagaaagtgtctgactacctgactgaaggccaagaagttcaagttaaagtgctggaaatc
gaccgccaaggccgtgtacgtctaagcatgaaagaagcggttgaaacttctgatgctgca
gcagcagaagtggcaccacaagcggaataa
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