Vibrio chaetopteri: PG915_01580
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Entry
PG915_01580 CDS
T10904
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vck Vibrio chaetopteri
Pathway
vck03020
RNA polymerase
Brite
Enzymes [BR:
vck01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PG915_01580 (rpoC)
Transcription machinery [BR:
vck03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PG915_01580 (rpoC)
DNA repair and recombination proteins [BR:
vck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PG915_01580 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XCD16303
UniProt:
A0AAU8BIW4
LinkDB
All DBs
Position
1:323628..327830
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLSTMDMHAEAEMMREELESTNSETKRKKITKRLKLVEAFIQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGMATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINVKGEGMYLAGPEEAEKAYRTK
SAELHARVKVRITETVVDEDGNSTTSTDMVDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ
ISNLLNECYRKLGLKDTVIFADQIMYAGFAYAALSGVSVGIDDMVVPQAKYDEIESAEEE
VREIQDQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMDNLSSETVTNRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHDHDCGTHEGVDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEEVLIPRNTLIDEKWCQIMEDNSVDSMKVRSVVTCDADFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNTGSVKL
HNAKFVINKDKKLVITSRASEMTIIDEFGRTKEKHKLPYGSMLTKGDNDAVQAGETVANW
EAHTLPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDEQGKDVMIAGTEMPALYFLPGKAIVNIEDGAEVGVGDTLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIIARDGGDNYEEMIPKHRQLNVFEG
ERVERGDVIADGPETPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSEFLPGEQVEYSQVKIANRALEAEGKELVRFERDLLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRDESQEGPS
AEQATDNLAALLNAGFSSDE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcacctgacatgattcgttcatggtcttttggtgaagttaaaaaa
ccagaaactatcaactatcgtacgttcaagcctgagcgcgatggtctgttctgtgcgcgt
atctttggcccagttaaagactacgaatgtctttgtggcaaatataagcgtctgaagcac
cgtggtgttatctgtgagaagtgtggtgttgaagttacacaaactaaagttcgtcgtgac
cgtatgggccacatcgagcttgcgtctccagtagctcacatctggttcctaaaatcgcta
ccatctcgtatcggtttgctaatggacatcccgctacgtgatatcgagcgcgttctttac
ttcgaaatgtacgtagtaacagaaccgggtatgacggatctagaaaaatcacagatgctt
actgaagaagagtatcttgatcgtctagaagagtggggtgatgagttcactgctaagatg
ggtgcagaagcgatcaaagatctgctgtctactatggacatgcacgctgaagcagagatg
atgcgcgaagagcttgagtctaccaactcagaaactaagcgtaagaaaattactaagcgt
ctgaagctagttgaagcatttattcaatcaggtaacaaccctgagtggatgatcctaact
gtgcttccggtacttccgccagatctacgtcctctagtaccactagatggcggccgtttc
gcaacgtctgatctgaacgacctataccgtcgcgtaatcaaccgtaacaaccgtttgaag
cgtcttctagagctagcggctccggacatcatcgtacgtaacgaaaagcgtatgctgcaa
gagtctgttgatgcccttctagataatggtcgtcgcggtcgtgcgatcacaggttcgaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aacctactaggtaagcgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctacatcagtgtggtcttcctaagaagatggcactagagctattcaaaccattt
atctacagtaagctagaaactcgtggcatggcgacgactatcaaagcagctaagaagatg
gtagagcgcgaagaagcgatcgtttgggatatcctagacgaagttatccgcgaacaccca
gtactattgaaccgtgcaccaacacttcaccgtcttggtattcaggcgttcgaaccagta
ctaatcgaaggtaaagcgattcagctacacccactagtgtgtgcggcatacaacgcggac
ttcgatggtgaccaaatggcggttcacgtgcctctaactctagaagcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcatcgggcgatccgatcatc
gtaccttctcaggacgttgtattgggtctttactacatgacgcgtgacaagatcaacgtt
aaaggtgaaggtatgtaccttgctggccctgaagaggctgagaaggcataccgtactaag
agcgcagagcttcatgctcgcgtaaaagtacgtatcactgagacggtggttgacgaagat
ggtaacagcacaacaagcacagacatggtagatactactgtgggtcgtgcaatgttgtgg
caaatcgtaccaaaaggtcttccatacagcttggtaaaccaaaagctaggtaagaagcaa
atctctaacctactgaatgagtgttaccgtaagcttggtcttaaagacacagtaattttt
gctgaccaaattatgtacgctggtttcgcttacgcggcactatcaggcgtttcagttggt
atcgatgacatggttgtacctcaagcgaagtacgacgaaatcgaatcagcagaagaagaa
gttcgcgaaattcaagaccagttccaatcaggtcttgtaacagcgggtgagcgctacaac
aaagtgatcgatatttgggcatcgaccaacgatcgcgtagcgaaagcgatgatggacaac
ctatcatctgaaacggttactaaccgtgacggtgaagaagagcaacaagagtcgttcaac
agcatctacatgatggctgactcgggcgctcgtggttctgcagctcagattcgtcagctt
gctggtatgcgtggtctgatggcacgtccagatggttcaatcatcgagacgccaatcacc
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaacagcgaactcgggttacctaacccgtcgtctt
gttgacgttgctcaggacgttgttgttcacgatcatgactgtggcacccatgaaggtgtt
gacatgatgcctcatatcgaaggtggtgacgttaaagttgcactttctgagctagcacta
ggtcgtgttgttgctgaagatgttcttaagccaggtactgaagaagttctgatcccacgt
aatactctgattgatgagaagtggtgtcagatcatggaagataactctgtagacagcatg
aaagtgcgctcagtagttacctgtgatgcagacttcggttgttgtgcacagtgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagtgggcgttatcgctgct
cagtctatcggtgagccgggtacacagcttacgatgcgtacgttccacatcggtggtgcg
gcatctactgcagcagcagagaacagcatccaagcgaagaacactggttctgtgaaactt
cacaacgcgaagtttgttatcaacaaagataagaaactggttatcacctctcgtgcgtca
gaaatgacgattatcgatgagttcggtcgtaccaaagagaagcacaaacttccttacggt
tcgatgctaactaaaggtgacaacgatgcagttcaagctggtgaaacagtagcgaactgg
gaagcgcacacgcttccaatcatcactgaagtagcaggtcgcatccagttcgtagacatg
atcgacggcgtaactgtttctcgtcaaacagatgacctaacaggtctatcttcaagcgaa
gtaacagaagcggcagctcgcccagcagcaggtaaagatatgcgtccagcaatcaaactt
gttgatgagcaaggtaaagacgtaatgatcgccggtactgaaatgcctgcactttacttc
ctacctggtaaagcgattgtaaacatcgaagatggcgcagaagtaggtgtgggtgatacg
ctagcacgtattccacaaaaatctggtggtaacaaagatatcaccggtggtctacctcgc
gttgcggacctatttgaagctcgtaagccaaaagagccagcaatccttgctgagcactct
ggtaccgtttcattcggtaaagagacgaaaggtaagcgtcgtctgatcatcgctcgtgat
ggcggtgacaactacgaagagatgattcctaagcatcgtcagcttaacgtgttcgaaggt
gagcgcgttgaacgtggtgacgtaattgcggatggtccagaaactccgcatgacattcta
cgtctacgtggtatccacgctgtgactcaatacatcgcgaacgaagttcaagaagtatac
cgtctacagggtgttaagattaacgataagcacattgagactatcgttcgtcagatgcta
cgtaagtgtacaatcacgcatgctggtgattctgagttcctacctggtgagcaagttgag
tactctcaagttaagattgcaaaccgtgctctagaagcagaaggtaaagaactcgttcgc
ttcgaacgtgacctactaggtatcactaaggcatctctagcaacagaatcgttcatctct
gcggcatcgttccaagaaacgacgcgcgtactaacagaggcagcggtatctggtaagcgt
gatgacctacgtggtctgaaagagaacgttatcgtgggtcgtctgatcccagcgggtact
ggttttgcgtatcaccaagaccgtcaagctaagcgtgacgaatctcaggaaggtccatca
gctgaacaagcgacggataacctagctgcgctactaaacgcaggtttctcttctgacgag
taa
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