Vibrio chaetopteri: PG915_03085
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Entry
PG915_03085 CDS
T10904
Symbol
rpoS
Name
(GenBank) RNA polymerase sigma factor RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
vck Vibrio chaetopteri
Pathway
vck05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vck00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
PG915_03085 (rpoS)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vck03021
]
PG915_03085 (rpoS)
Transcription machinery [BR:
vck03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PG915_03085 (rpoS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
XCD16560
UniProt:
A0AAU8BK14
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All DBs
Position
1:670719..671702
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AA seq
327 aa
AA seq
DB search
MSISNAVTKNENFDANSETVDVVEPTLTNDDAATETEDKDLYDASAKSLDATQLYLGEIG
FSPLLTAEEEVLYARRALKGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLG
LIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELS
QKLDHEPTAEEIAHKLDKPVSDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDSTHSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQ
VEGLRRLRDILVKQGLNMESLFNFDDD
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcagcaatgcagtaaccaagaacgaaaacttcgatgccaacagtgagactgtt
gatgttgtagaacctacactgacgaacgatgacgccgcaacagagactgaagacaaggat
ttgtacgatgcctctgcgaaaagcttagatgccacccagctctatctcggcgaaatcggc
ttttcaccactcttgaccgcagaagaagaagtgctctatgcaagacgtgcactgaaaggc
gatgaagcagcccgtaaacgcatgatcgaaagtaacttgcgattagtggttaagatctct
cgacgctacagtaaccgtggtctagcgcttcttgatttaattgaagaaggcaatttaggt
cttattcgtgcagtagagaaattcgaccccgagcgcggcttccgtttctcaacgtatgcg
acgtggtggatacgccaaactattgagcgtgctttgatgaatcaaacacgcacgattcgt
ctgcctatccatgtggtaaaagagctcaacatttacctacgtacagcccgtgaactgtcc
caaaagctggatcatgagccaacagccgaagaaattgcacataagctggataaaccggtg
agcgacgtttccaagatgctgagactcaatgaacgtatcagttcggttgatacgccaatt
ggtggggacggtgagaaagcgctgttagatatcattccggattcaacgcactcagatcct
gaagtctcaacccaagatgacgatattaaatcatcgcttattcactggcttgatgaactg
aatccaaaacaaaaagaagtgttggcacgacgctttggattgctaggctatgagccttca
acccttgaagaagttgggcgagaaatcaatcttactcgcgagcgtgtgcgtcaaattcaa
gtcgaaggtctacgtagactgcgtgacattttagtcaagcaaggcttgaatatggaatca
ctgtttaactttgacgacgattaa
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