Vibrio chaetopteri: PG915_14795
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Entry
PG915_14795 CDS
T10904
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vck Vibrio chaetopteri
Pathway
vck02020
Two-component system
vck02040
Flagellar assembly
vck05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vck00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PG915_14795
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
PG915_14795
09142 Cell motility
02040 Flagellar assembly
PG915_14795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vck03021
]
PG915_14795
Transcription machinery [BR:
vck03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PG915_14795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
Motif
Other DBs
NCBI-ProteinID:
XCD15822
LinkDB
All DBs
Position
1:3260880..3262346
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AA seq
488 aa
AA seq
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MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLDVEESAEEVSNDD
KPTAENKDESPTAEIISEPELKDSSDQIEKSEISNELEMDTTWDDVYSANTGNTGIAVDD
DMPIYQGETTQSLQDYLVWQLDLTPFTETDRAIALAIIDAVDDYGYLTLSCEEILESVDI
EDVELDEVEAVRKRIQQFDPLGIASLNLQDCLLLQLATFPEDTPWLAEAKLVLTHHIDQL
GNRDYKLVIKETKLKEAELREVMKLIQQLDPRPGSKITPDETEYVVPDVSVFKDRGKWVV
QINPDSVPRLKVNQQYAQLGTGNSADSQYIRSNLQEAKWLIKSLESRNETLLKVAKCIVE
HQHDFFEYGEEAMKPMVLNDVALAVDMHESTISRVTTQKYMHTPRGIFELKYFFSSHVST
DNGGECSSTAIRALIKKLVAVENPAKPLSDSKIAAQLADQGIQVARRTIAKYRESLGIAP
SSQRKRLL
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccctcattacaactcaagctaggtcaacagttagcaatgacgccacagctgcag
caagcaattcgcttactgcaattgtcgacgcttgatttgcaacaagagatccaagaagcg
ctggactcaaacccacttctcgacgttgaagaatctgccgaagaggtaagcaatgacgac
aagcccactgctgagaacaaagatgagagcccaactgcagaaataatcagtgagcctgag
cttaaggacagctctgatcaaattgaaaaatcagagatctccaacgagctagaaatggat
accacgtgggacgatgtctacagcgctaacactggtaataccggcattgccgtcgacgat
gacatgcccatttatcagggtgaaaccactcagtcactacaagactacttggtgtggcaa
ctcgatttaaccccctttacggaaaccgatcgcgccattgctctagccatcattgatgct
gtagacgactacggctacctgacactctcttgcgaagaaattttagaaagtgtcgatatt
gaagacgttgagctcgatgaagtcgaggctgtacgcaaacgcattcagcaatttgaccct
ctaggcattgcatctctcaaccttcaagactgcttactgctacaacttgcgaccttccct
gaagatacgccatggcttgccgaggccaagttagtccttactcaccatattgaccagtta
ggtaaccgtgactacaagttggtgattaaagagaccaaacttaaagaagcggaactacgt
gaagtcatgaagctgattcagcaacttgacccacgccctggcagtaagatcaccccagat
gaaaccgaatatgtagtgcctgatgtatcggtgttcaaagaccgtggtaaatgggtagtg
cagatcaacccagatagtgtgcctaggctaaaggtcaatcagcagtatgctcagctaggt
accggcaacagtgcagacagccaatacattcgctctaaccttcaagaagcgaaatggcta
atcaaaagcctcgaaagccggaatgaaaccctattaaaagtggctaagtgtattgtggaa
catcagcatgatttcttcgaatatggcgaagaagcgatgaagccaatggtgctaaacgac
gttgcactcgcggtcgacatgcatgaatccaccatctcgcgtgtgacaacacaaaagtat
atgcatacaccacgcggcatcttcgagctcaaatatttcttctcaagccatgtgtcgacc
gacaatggtggagaatgctcgtcaaccgctatacgtgccctaatcaagaagcttgttgct
gtggaaaacccagccaagccattgagcgatagtaaaatcgcagctcaactcgctgaccaa
ggaattcaggtcgctaggcgaaccatagcgaaataccgtgaatcgttgggcatcgcccca
tccagtcagcgtaaacgcctactctaa
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