KEGG   Vibrio chaetopteri: PG915_15485
Entry
PG915_15485       CDS       T10904                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
vck  Vibrio chaetopteri
Pathway
vck02024  Quorum sensing
vck03018  RNA degradation
vck05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vck00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PG915_15485 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PG915_15485 (hfq)
   05111 Biofilm formation - Vibrio cholerae
    PG915_15485 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vck03019]
    PG915_15485 (hfq)
   03036 Chromosome and associated proteins [BR:vck03036]
    PG915_15485 (hfq)
Messenger RNA biogenesis [BR:vck03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     PG915_15485 (hfq)
Chromosome and associated proteins [BR:vck03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    PG915_15485 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: XCD15940
UniProt: A0AAU8BHM9
LinkDB
Position
1:complement(3378473..3378736)
AA seq 87 aa
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARAVSHHSGERTGGDRQQEKSED
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctcttcaagacccattcctaaatgcactacgtcgcgagcgtatc
ccagtttctatctacctagtgaatggcatcaagctacaaggtcagattgaatcgtttgat
cagtttgtgatccttctgaaaaatactgtaaaccaaatggtttacaagcatgcgatttca
acggttgttccagcccgtgctgttagccatcacagtggtgagcgtactggcggcgaccgt
caacaagagaaatctgaagattaa

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