Vibrio chaetopteri: PG915_22320
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Entry
PG915_22320 CDS
T10904
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vck Vibrio chaetopteri
Pathway
vck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG915_22320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vck03019
]
PG915_22320
03009 Ribosome biogenesis [BR:
vck03009
]
PG915_22320
Enzymes [BR:
vck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PG915_22320
Messenger RNA biogenesis [BR:
vck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PG915_22320
Ribosome biogenesis [BR:
vck03009
]
Prokaryotic type
rRNA helicases
PG915_22320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
XCD18016
UniProt:
A0AAU8BNS1
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All DBs
Position
2:1465632..1467578
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AA seq
648 aa
AA seq
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MTDSTIQFSDLALNDAILSALEGMGFVSPTPIQAAAIPHLLEGKDALGKAQTGTGKTAAF
SLPLLNKLDLGQRKPQAIVLAPTRELAIQVAAEVKNLGKNVAGLKVLEIYGGASIVDQMR
ALKSGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPST
AQRVLFSATMPPMLKKIVDRFLREPEYIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDKVAEARLVKLGEELAQEAEHKSLDKFAELVEKLQETLEIDAAT
LAAILLKRQQGKRPLFYIGEDPMIAAIERDKQRRKERRDNRDRDGGRDGGRNFNTQDWDT
YQLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLDRESTYVQLPKAMTSDVAGKLQKL
RIRQKEAGAVVVDFNDFREPRGRRDGGGRRDGNRDGNRDGNRGGYRGNREGGGNREGGGY
RGNREGNREGGRGRGDGERRFDRNRGGDHRGSHRGERSFSRGNRRDEA
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgacagattctactatccagtttagcgatttagcgctgaacgacgcaatcctttctgct
cttgaaggaatgggttttgtttctccaacgcctatccaagctgcagctattcctcacctt
ctagaaggtaaagacgcgctaggtaaagcacaaaccggtactggtaaaacagcggctttc
tctcttcctctactcaacaagctagaccttggtcaacgcaagccacaggctatcgttctt
gcgccaactcgcgaacttgcgattcaggttgctgccgaagttaagaaccttggtaaaaac
gttgctggtcttaaagttctagagatctacggtggtgcatctatcgttgatcaaatgcgt
gcacttaaatctggtgctcacattgttgttggtactccaggtcgtgttcaagaccttatc
aaccgtgaccgtctacacctagacgaagtacacacgtttgttcttgatgaagcagatgaa
atgctaaacatgggctttgttgatgacgtaacagagatcatggagcacgctccatcaact
gcacaacgcgtactattctctgcaactatgcctccaatgcttaagaagatcgttgatcgt
ttcttgcgtgagccagagtacatcgacgttgctggtaaaaaccacactgttgacaaagta
gagcagcaattctgggttgttaaaggcgtagaaaaagacgaagcaatgtctcgtcttcta
gaaacagaagaaactgacgcgtcaatcgtattcgtacgtactcgccaagacactgagcgt
cttgcagactggttatcagcgcgcggcttcaaagcagcagcactgcatggtgacattcct
cagtctcaacgtgagcgcactgttgatcacatcaaacaaggtgttattgacatcctagtt
gcaactgatgttgttgcacgtggcctagacgttccacgtattacacacgtattcaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggccgtactggtcgtgctgga
cgtaaaggtaaagcgatccttctagttcgcacaaaccaaatccgtatgcttcgcactatc
gagcgcgtaactaagtcttcaatggaagaaatccaacttcctctacgtgacaaagttgca
gaagctcgtctagttaagctgggtgaagaacttgctcaagaagctgagcacaagtcactt
gataagtttgctgagcttgttgagaagctgcaagaaactctagagattgacgcggctaca
ctagcggcaattcttcttaagcgccagcagggtaaacgtccattgttctacattggtgaa
gacccaatgatcgctgctatcgagcgtgacaagcagcgtcgcaaagagcgtcgtgacaat
cgtgatcgcgacggtggtcgtgatggtggccgtaatttcaacactcaagattgggatacg
taccaacttcaagtgggtcgcgagcaaggcgttcaagttaaagacatcgttggtgcacta
gcaaacgaactaggcctaactaaaggttctatcggtgctatcaagctagatcgtgaatca
acttacgttcagcttccaaaagcaatgacttcagatgttgctggtaagctacagaaacta
cgtatccgtcaaaaagaagcgggtgcagtagtggttgattttaacgacttccgtgagcct
cgtggtcgtcgtgatggcggtggccgtcgtgatggtaaccgagatggtaaccgagatggt
aaccgtggcggttaccgtggcaaccgtgaaggtggtggtaaccgtgaaggcggtggctac
cgtggtaaccgtgaaggcaatcgtgaaggtggccgtggtcgtggtgacggtgagcgtcgt
tttgaccgcaaccgtggtggtgaccaccgtggcagccatcgtggagagcgttcattctca
cgcggtaaccgtcgtgacgaagcttaa
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