Vibrio cholerae O1 LMA3984-4: VCLMA_A0100
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Entry
VCLMA_A0100 CDS
T01871
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vcl
Vibrio cholerae O1 LMA3984-4
Pathway
vcl03030
DNA replication
vcl03410
Base excision repair
vcl03420
Nucleotide excision repair
vcl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VCLMA_A0100
03410 Base excision repair
VCLMA_A0100
03420 Nucleotide excision repair
VCLMA_A0100
03440 Homologous recombination
VCLMA_A0100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcl03032
]
VCLMA_A0100
03400 DNA repair and recombination proteins [BR:
vcl03400
]
VCLMA_A0100
Enzymes [BR:
vcl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VCLMA_A0100
DNA replication proteins [BR:
vcl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VCLMA_A0100
DNA repair and recombination proteins [BR:
vcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
VCLMA_A0100
NER (nucleotide excision repair)
GGR (global genome repair) factors
VCLMA_A0100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
AEA77419
LinkDB
All DBs
Position
I:102877..105681
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AA seq
934 aa
AA seq
DB search
MAHIPDNPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAV
IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT
LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR
DNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDGGTGVVT
ADEQTKTSSVTVSTAASHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFD
TETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVIAQLKPLLEDESKA
KVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQ
VAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVP
VLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMK
LPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV
HTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMA
HLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAK
QLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMR
RKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLS
EIESKVQQLMESAAELAVPLVAEAGHGDNWDQAH
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggctcatatacctgacaatccattgattttgatcgacggctcctcttacctttatcgc
gcatttcatgcttacccgggcaccatgagtaatggtgaaatcccaaccaacgccatctat
ggtgtggtaaacatgattcgcagcatgatgcgccagttcgcttcggatcgcatggcggtg
atttttgatgccaagggaaaaaccttccgtgatgagatgtacgatcaatacaaggcgcat
cgtccacctatgccagatgagttgcgctgtcaggttgaacctttacaccaagttattcgc
gctatgggtttaccgctgttggcgattgaaggtgtagaagcagacgatgtgattggtacg
ctggcgcgccaagcctcacaagctggtatgcctgttttgatcagtactggcgataaagat
atggcgcagttggtggatgataatattaccctgatcaataccatgaccaacgtcgtgctg
gatcgcgaaggtgtgattgaaaaattcggtatcccgccagagcttattatcgactacctc
gccttgatgggtgataaagtggataacattccgggcgtacctggggtgggtgaaaaaacc
gcgaccgcacttttgcaagggattggcggcttagaagcgctgtacgccaacctcgataaa
atcgctgctttaggcttccgtggctcaaaaaccatggcacaaaagctggaagagaaccgc
gataatgccaagctctcttatcaactcgccaccatcaaatgtgatgtcgagcttgaggaa
tctccgcaaaccctgctaaagcagactcccgatcgtgacgccttgatgtcgctctacggt
aagctcgcctttaaatcttggctgaccgaattgcttgatggtggtacaggtgttgtgacg
gcggacgagcaaacgaaaacctcttcagttactgtgtcaaccgcagcaagtcatgcggct
gcgattcctgaaagccctgcggcccacatcgatcgtagtcagtatcaaaccatcctaaac
gagcaagacttccagctttggttagagaagttaaagcaagccgagctgtttgcctttgat
acggaaaccgacaaccttgattacatggtcgccaatttggtggggatgtcgtttgccgtt
gccgaaggtgaagcggcttatctgccagttgcgcacgattatctggatgcgccgcagcag
ttggatcgcgactgggtgattgcccagctgaaacctttgcttgaagatgaaagcaaagcc
aaagtgggccaaaacctcaaatacgatgcgagcgtgatggcgcgctacggcgttgagctg
cgtggtattcgccatgacactatgctgcaatcctacgtctataacagcgtgggcggcaaa
catgatatggatagtttagcgctgcgttttttacagcacagctgtatctcgtttgaacaa
gtggcaggtaagggtaagaaccagctcacctttaaccaaatcgctttagaagaagcggca
caatacgcggcagaagatgcggatgtgacgttgcgtctgcatcagcgaattcatccgttg
attgagcaagacgctaagcttgagcaagtgtatcgcgaaatcgaaatgccgctggtacct
gtgctatcacgtattgaacgtacgggcgtgatgatcgacgacatgctgctcagtgcccaa
tcgcaagaaattgcgttacgtttagatcaattagaacaaaatgcttatgagttggcaggt
cagccgttcaacttaagctcgccgaagcagctacaaactattttgtttgagcagatgaag
ctgcctgtcttgcaaaaaacgccatccggtaccccttcaaccaatgaagaagtgttgcaa
gagctggctttggattacccactgcccaaggttctgattgagtaccgcggtctggccaaa
ctcaaatcgacctataccgataagttgccgaagatgattaacccaagtacagggcgcgtg
catacttcctatcatcaagcagtgacggccactgggcgtctctcctccactgatcctaac
ttgcagaacattccagtgcgtaatgaagaaggacgccgtattcgccaagcgtttgttgct
ccgcatggttggaaaatcatggcggtcgactactcgcaaatcgagctgcgcatcatggcg
cacctgtcgggcgatcaggcgttattggatgctttccgtgatgggaaagatatccatgcg
gcgacagcagcagaaatcattggtgtgccgattgatcaagtgagcagtgagcagcgtcgc
cgagcgaaagcggtgaactttggtttgatctacggcatgagtgcgtttggtctggcaaaa
cagctcggtattccacgcggtgaagcacaagagtatatggataaatactttgagcgttat
cccggcgtgatgcagtacatggaagatacgcgtagccgtgctgcacaattgggttatgtc
gaaaccatcttcggtcgtcgcttacatttgccggaaattacctcacgtaacgctatgcgc
cgcaaagcggctgagcgggcagcgatcaacgcaccgatgcaaggcactgcggcagacatc
atcaaaaaagccatgttgttggtggatgagtggattgagcgggaaggcgatggccgagtc
aaattgctgatgcaagtacacgatgaattggtctttgaagttaaagagtcatctttatcc
gaaattgaaagtaaagtacaacagctgatggagtcagcggccgagcttgcagtaccttta
gtggccgaagccggccacggcgacaactgggatcaggcgcactag
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