KEGG   Vibrio cholerae O1 LMA3984-4: VCLMA_A0268
Entry
VCLMA_A0268       CDS       T01871                                 
Name
(GenBank) ATP-dependent RNA helicase RhlB
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
vcl  Vibrio cholerae O1 LMA3984-4
Pathway
vcl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vcl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VCLMA_A0268
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcl03019]
    VCLMA_A0268
Enzymes [BR:vcl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VCLMA_A0268
Messenger RNA biogenesis [BR:vcl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     VCLMA_A0268
SSDB
Motif
Pfam: DEAD Helicase_C ResIII ERCC3_RAD25_C CMS1
Other DBs
NCBI-ProteinID: AEA77582
LinkDB
Position
I:complement(299314..300630)
AA seq 438 aa
MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT
LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG
GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN
EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE
QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGG
NRKPQQRRPRAPRPKKEA
NT seq 1317 nt   +upstreamnt  +downstreamnt
atgaaaaagacgcatatcacagagcataagttcgccgactttggtttacagccacaagtt
attgatggactggaaaaaaaggggtttgtttactgcacccctatccaagcattggcgttg
ccggtactgctctccggccaagacatcgcaggccaggcccaaacagggactggtaaaacg
ctcgcgtttcttactgctaccttcaaccatttattgaccacaccagccgctgaaggccga
gcagaaactcagccacgcgccattattatggccccgactcgcgaactggcgattcagatc
tttaatgatgccgagcctttgttggcctccactggtctgaaagcagctttggcttatggt
ggcgaaagctatgataagcaactcgcaaaattgcaaagtggcgtcgatattctgatcggg
accaccggccgcattatcgatttctacaaacagcgtgtcttcaacctcaatcatattcaa
gcagtggtactggatgaagcagatcgcatgtttgatctcggctttattaaagacattcgt
ttcttgttccgccgtatgcctgagcccaaagatcgtctcaacatgctgttctctgccacc
ctctcttaccgcgtgcaagagctggcttttgaacacatgaacaatcctgaacatgtggtg
gtagagcctgagcaaaaaaccggtcatcgcattcaggaagagctgttctacccatcgaac
gaacacaagatggcgctgctacagactcttatcgaagaagagtggccagatcgcgcaatc
atttttgctaacactaagcaccgctgtgaacagatttgggcacatttggcggccgataac
caccgtgttggcctactaactggtgatgtaccgcagaagaaacgtgagcgtattttagag
cagttcacccaaggtgatgtggacattctggttgcgaccgacgttgcggcacgcggcttg
cacattcctcaagtgacccacgtgtttaactacgatttgcctgacgattgtgaagactat
gtacaccgtattggccgtacgggtcgcgcgggcgcaagtggccactcgataagctttgcg
tgtgaagagtacgcgattaatttgccggcgatcgaaagctacattgagcatgcgattcca
acctcagactacgatccttcagctctgctgacggacttacctgcgcctctgagcctacgt
tcgtcgccacaacagcgccgcaccaataccgcaggttctcgcaatagcaataatggtggc
aatcgcaaacctcagcaacgccgcccacgcgcaccacgcccgaaaaaggaagcctga

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