Vibrio cholerae O1 LMA3984-4: VCLMA_A0581
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Entry
VCLMA_A0581 CDS
T01871
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
vcl
Vibrio cholerae O1 LMA3984-4
Brite
KEGG Orthology (KO) [BR:
vcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vcl03009
]
VCLMA_A0581
Enzymes [BR:
vcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VCLMA_A0581
Ribosome biogenesis [BR:
vcl03009
]
Prokaryotic type
rRNA helicases
VCLMA_A0581
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
UvrD-helicase
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEA77866
LinkDB
All DBs
Position
I:complement(660051..661322)
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AA seq
423 aa
AA seq
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MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP
ALQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHAD
ILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWR
KQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKK
ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL
LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR
VERYIKEEVKERFIDGLRPKHKKPVFKKKKKDSKKTADKGAVKKKTTSKPKAKATKKKAA
TKA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
gtgattaaaacctttgccgacctcgaactcgatccaattttgcttgaagcgatcgaagaa
atgggctttagccgcccaacccaagttcaggctgaagcaatcccgcaagcactggatggt
cgcgatgtcttagcctcagccccaacaggcacgggtaaaacggcggctttcgtgatccca
gcgctgcaatatttgctcgatttcccacgccgtaaagcgggtcctgcgcggattttgatc
ctgactccgactcgtgaactggcgatgcaagtggctgaacaagcacaagcgctggccaaa
aatactcgtctgaacattttcaccattaccggtggtgttcagtaccaagagcacgccgat
attctggccacgactcaagatatcgtggtcgccacaccaggacgtctgctggaatacatt
gacgccgagcgctttgattgtcgtgcgattgagtggctgatcctcgatgaagcggaccgc
atgttggatatgggttttggcccaaccgttgaccgcctttcaaccgagtgtcgctggcgt
aaacagacactgctcttctctgcgactttagaaggccgcggtgtggaaggctttactgcc
gatctgttaaaagatcccgcccatgtcgatgccgagccaccccgtcgtgagcgtaagaaa
atttcgcagtggtaccaccgcgccgatgatatgcctcacaaagtggagctgctgaaaaag
atcctgaccgagcaagctgaacgttctatcgtgtttttgaaaactcgtgagcgtctcgca
gacctccgtgctgagctggagaaagcccagatcccttgtgcttggattcaaggtgaaatg
ccgcaagatcgccgtaacaatgcgatcagccgtttccgtgaaggcgatgtcaatattctg
ctggctaccgatgtggcggcgcgtggtattgatgtgccagacattagccatgtgatcaac
tttgacttgccacgcagtgctgacgtttacctacaccgtattggtcgcaccggacgtgca
gggaaaaaaggtattgctatttcactggttgaagcgcacgaccagccgatgatggcgcgt
gttgaacgttacatcaaagaagaagttaaagagcgctttattgatggtttacgccctaag
cacaaaaagcctgtgtttaagaaaaagaaaaaagacagcaagaaaaccgcagacaaaggc
gcggtgaaaaagaaaaccaccagcaagccaaaagcaaaagcgaccaagaagaaagccgcg
accaaagcctaa
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