Vibrio cholerae O1 LMA3984-4: VCLMA_A1002
Help
Entry
VCLMA_A1002 CDS
T01871
Name
(GenBank) Phosphogluconate repressor HexR, RpiR family
KO
K19337
RpiR family transcriptional regulator, carbohydrate utilization regulator
Organism
vcl
Vibrio cholerae O1 LMA3984-4
Brite
KEGG Orthology (KO) [BR:
vcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vcl03000
]
VCLMA_A1002
Transcription factors [BR:
vcl03000
]
Prokaryotic type
Helix-turn-helix
Other families
VCLMA_A1002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_6
SIS
SIS_2
HTH_Tnp_ISL3
HTH_24
HTH_29
Penicillinase_R
MarR
DUF3640
Motif
Other DBs
NCBI-ProteinID:
AEA78259
LinkDB
All DBs
Position
I:complement(1121161..1122015)
Genome browser
AA seq
284 aa
AA seq
DB search
MNTLEKIQKNLENFSKSERKVAEVIMASPQTAIHSSIATLAKMADVSEPTVNRFCRRLDT
KGFPDFKLHLAQSLANGTPYVNRNVEEDDGPDAYTHKIFESTMACLDVAKNSLDPVQINR
AVDLLTQAKRISFFGLGASSAVARDAQNKFIRFNIPISCFEDIVMQRMSCINCTDNDVIV
LISHTGRTKSQVEIANLARENGATVIAITAKDSPLDKASSLSICLDVPEDTDVYMPMASR
VVQMTVIDVLATGFTLRRGSGFRENLKRVKEVLKDSRYDKLPPY
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgaatacattagaaaaaattcaaaaaaacctggaaaactttagcaagtctgagcgtaag
gttgccgaagtgattatggcatcaccacaaaccgctattcattccagcattgctacgctg
gcgaaaatggcggacgtgagtgaacctacggtgaaccgtttctgtcgccgccttgatacc
aaaggttttccggactttaaactgcatttagctcaaagccttgcaaacggcacgccttac
gttaaccgtaacgtagaagaggatgatggcccagatgcttacacccacaagattttcgaa
tcgaccatggcgtgtctggatgtggcgaaaaacagtttggatcccgtgcaaatcaaccgt
gctgttgacctgctcactcaagcaaaacgtatttcgttttttggcttaggcgcgtcctct
gcggtcgcacgcgatgcacagaataaatttatccgcttcaatattccgatcagctgcttt
gaagatattgtgatgcagcgaatgagctgtatcaactgcactgataatgatgtgattgtg
ctgatttctcatactggccgcaccaaaagtcaggttgaaatcgccaatcttgctcgtgaa
aacggagcaacggtgatcgcgattaccgctaaagattcaccactggacaaagccagttca
ttatcgatctgcttagatgtgcctgaagacacagacgtgtatatgccaatggcaagtcgc
gtagtgcaaatgaccgtgatcgatgtattggcaactggctttactttgcgccgaggttca
ggctttagagaaaatcttaagcgcgtgaaagaagtgctgaaagattctcgctacgacaaa
ctaccgccttactag
DBGET
integrated database retrieval system
