Vibrio cholerae O1 LMA3984-4: VCLMA_A1768
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Entry
VCLMA_A1768 CDS
T01871
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vcl
Vibrio cholerae O1 LMA3984-4
Pathway
vcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VCLMA_A1768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcl03019
]
VCLMA_A1768
03009 Ribosome biogenesis [BR:
vcl03009
]
VCLMA_A1768
Enzymes [BR:
vcl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VCLMA_A1768
Messenger RNA biogenesis [BR:
vcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VCLMA_A1768
Ribosome biogenesis [BR:
vcl03009
]
Prokaryotic type
rRNA processing factors
VCLMA_A1768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
KH_1
Motif
Other DBs
NCBI-ProteinID:
AEA78971
LinkDB
All DBs
Position
I:2016832..2019990
Genome browser
AA seq
1052 aa
AA seq
DB search
MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEELEWD
LNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEH
IRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLR
EAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVL
RLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFE
VIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAP
TPKPKAEPQPVAEAQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRER
NERNNDRRRNPRDKNRRRGNEENNERNDKETSNNNRKPQERKPKQERGDRNERNDRNERP
ETERPERQDRRNSRNKRDESKTAKLLEQGRQLAAEAQQEVKAVEPKEEKAAVVKERRQRR
KLSKQIRVKDQLAAEELDNLSTAPVDNAFDAPAPVNLPVTDDFADSAQENNEQDDQKQRR
NRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETA
EGAQHVTHVTPTAATAVVESEKVAAPRVLGGFAFPEMAMGKVIVRRETAAVQPEPVVQEP
VIADVIAETLIAPVEPVVVEATVIEAPVIEESATETAALETVVAKVAEVEEPATISDEVV
AQTTVEVIADKMAEPIKVVKPVSVSAKSLTAKAVIQQPYASSPMTKAPGSDDIREVQVNA
APLRAERYQARGAGSQVARNQASAGMSKPQSF
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaacgcaactcaaaaagaagagttgcgtgtcgcgttggtcgatggccaacgt
ctgttcgatctggatattgaaagtccggggcacgaatcgaaaaaagcaaatatctacaaa
ggccgcattacccgcattgaacccagtcttgaagctgcattcgttgactacggtgctgaa
agacacggtttcctccctctcaaagaaatcgctcgtgaatatttccctgatggttatagc
taccaaggtcgtccaaacatcaaagatgtgctgaacgaaggtcaggaagtgatcgtgcaa
atcgagaaagaggagcgtggtagcaaaggtgcagccctaaccacctttatctctctagcg
ggcagctacttagttctgatgccaaataaccctcgtgctggcggtatttctcgtcgtatc
gaaggcgatgagcgcactgaactgaaatccgcactcagctcattagaactgccacaaggt
atgggcttaattgttcgtaccgcaggcgtaggtaaaagcgctgaagagctagagtgggac
ttaaatgtactgcttaagcactggagtgcgattaaacaagcgtctgattcaaatcctgca
cctttccttatccaccaagaaagtaatgtgattgttcgtgcgatccgtgattacttgcgt
cgtgatattggtgaaattcttatcgacagcaacagcatttacgagcgtgctcttgagcat
attcgtttagtgcgcccagatttcgtcaatcgtgtgaaaaaatacgaaggcgaagtaccg
ctgttcagccatttccaaatcgaaagccagattgaatcggctttccaacgtgaagttcgc
ctgccttctggtggttcaatcgtcattgacccgaccgaagccttgacttccatcgacatc
aactctgcccgcgcaaccaaaggtggcgatattgaagagaccgctctcaataccaaccta
gaagctgcagatgaaatcgcacgccaattgcgtctgcgtgacctcggtggtcttgtggtg
atcgacttcatcgatatgacccctgttcgccaccagcgtgaagtggaaaaccgtctacgt
gaagcagtgcgtgttgatcgtgctcgcgttcaaattggccgtatttctcgctttggtttg
ctggaaatgtcgcgtcaacgtttgagtccttctctggcagaagcaagccatcacatctgt
cctcgttgtaaaggaaccggcgtgattcgtgacaacgaatctttggcactttctgttctg
cgcttaattgaagaagaagcactcaaagacaacacatcgcaagtgcttgcggtggtacct
gtctctatcgcttcttatctgttaaacgagaagcgtcgctcaatcaatcacattgaaaaa
gcgcagcaagttcgcattactatcgtgccaaattccgatatggaaacaccgcactttgaa
gtgatccgcgtgcgtgaaggtgaagagcaagatgttctctcttacctgattccgaaaaag
ctggaagcgatgaaagaagcggaaggcaaagaagtggtcgatgttgagctcaaaccaaaa
cgtattgaagagccagtactgaaaggttttgcagcgcctgcggaagcggttcctgctcca
acaccaaaacctaaagcagaacctcaacctgttgcagaggcacagcaacctgcgcagcct
ggtttctttagccgtgtgtttaaagcgattgcgagcctattctctgcgacaccggaagcg
gccaaagtagaagcgcctgtaacgcagaatagtgaacaagacaaacctcgtcgtgaacgt
aacgagcgtaataatgatcgtcgtcgtaaccctcgtgacaaaaaccgtcgccgcggtaat
gaggaaaacaacgagcgtaacgataaagagacatcaaacaacaaccgtaagccacaagag
cgcaagccaaagcaagagcgtggtgatcgtaacgaacgtaatgaccgcaatgaacgtcca
gaaaccgagcgtccagaacgtcaagatcgtcgtaatagtcgtaataaacgagatgaaagc
aaaacggctaaattgcttgagcaaggtcgccaattagcggctgaagcacaacaagaagtt
aaagccgttgaacctaaagaagagaaagccgcggttgttaaagaacgtcgtcaacgtcgt
aagctctcgaagcaaattcgagtcaaagatcagcttgccgcagaagagttagacaacctg
tctacagctcctgttgacaatgcgttcgatgctccagcgccagttaatctgcctgtaacc
gatgattttgcggattcggctcaagagaataacgagcaagatgatcagaagcagcgtcgt
aatcgccgctcgccacgtcatctgcgcgccagcggccagcgtcgccgtcgcggtcgtgat
cgtcgccctaacccattccgtctgcgtaaaggtggggttgcctctcctgagatggccatg
ggtaaagtgatgcctcgctacgacttagcgccgcgtccacagtcgcgccatgaaactgct
gaaggtgctcaacatgtgactcatgtaacaccgactgcggcaactgcagtagtagaaagc
gaaaaagtggcagcgccacgtgtactcggaggctttgccttcccagaaatggcgatgggt
aaagtcatcgtgcgtcgtgaaactgctgcggttcaacctgagccagtagtgcaagagcca
gtgattgctgacgtgatcgcagagacactcatcgcacccgttgagccggtcgtggttgaa
gctacagtgattgaagctccggtaattgaagagtcagcaacagaaactgctgcgctagaa
accgtagtggcgaaagtcgctgaagtcgaagagccagccacaatcagtgacgaggttgtc
gcacaaacaacagttgaagtgatcgcagacaaaatggcagaaccaattaaggttgttaag
ccagtgtcagtgagtgcaaaatcactcaccgcgaaagcagtcatccaacagccgtacgcc
tcatcgccgatgactaaagcacctggctcagatgacatccgtgaagtgcaggttaacgcc
gcgcctttacgtgctgaacgttaccaagcgcgtggtgcgggtagtcaagtcgcgcgtaat
caagccagtgcgggtatgagtaagccgcaaagcttctaa
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