KEGG   Vibrio cholerae O1 LMA3984-4: VCLMA_A1768
Entry
VCLMA_A1768       CDS       T01871                                 
Name
(GenBank) Ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
vcl  Vibrio cholerae O1 LMA3984-4
Pathway
vcl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vcl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VCLMA_A1768
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcl03019]
    VCLMA_A1768
   03009 Ribosome biogenesis [BR:vcl03009]
    VCLMA_A1768
Enzymes [BR:vcl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     VCLMA_A1768
Messenger RNA biogenesis [BR:vcl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     VCLMA_A1768
Ribosome biogenesis [BR:vcl03009]
 Prokaryotic type
  rRNA processing factors
   VCLMA_A1768
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 KH_1
Other DBs
NCBI-ProteinID: AEA78971
LinkDB
Position
I:2016832..2019990
AA seq 1052 aa
MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEELEWD
LNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEH
IRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLR
EAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVL
RLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFE
VIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAP
TPKPKAEPQPVAEAQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRER
NERNNDRRRNPRDKNRRRGNEENNERNDKETSNNNRKPQERKPKQERGDRNERNDRNERP
ETERPERQDRRNSRNKRDESKTAKLLEQGRQLAAEAQQEVKAVEPKEEKAAVVKERRQRR
KLSKQIRVKDQLAAEELDNLSTAPVDNAFDAPAPVNLPVTDDFADSAQENNEQDDQKQRR
NRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETA
EGAQHVTHVTPTAATAVVESEKVAAPRVLGGFAFPEMAMGKVIVRRETAAVQPEPVVQEP
VIADVIAETLIAPVEPVVVEATVIEAPVIEESATETAALETVVAKVAEVEEPATISDEVV
AQTTVEVIADKMAEPIKVVKPVSVSAKSLTAKAVIQQPYASSPMTKAPGSDDIREVQVNA
APLRAERYQARGAGSQVARNQASAGMSKPQSF
NT seq 3159 nt   +upstreamnt  +downstreamnt
atgttaattaacgcaactcaaaaagaagagttgcgtgtcgcgttggtcgatggccaacgt
ctgttcgatctggatattgaaagtccggggcacgaatcgaaaaaagcaaatatctacaaa
ggccgcattacccgcattgaacccagtcttgaagctgcattcgttgactacggtgctgaa
agacacggtttcctccctctcaaagaaatcgctcgtgaatatttccctgatggttatagc
taccaaggtcgtccaaacatcaaagatgtgctgaacgaaggtcaggaagtgatcgtgcaa
atcgagaaagaggagcgtggtagcaaaggtgcagccctaaccacctttatctctctagcg
ggcagctacttagttctgatgccaaataaccctcgtgctggcggtatttctcgtcgtatc
gaaggcgatgagcgcactgaactgaaatccgcactcagctcattagaactgccacaaggt
atgggcttaattgttcgtaccgcaggcgtaggtaaaagcgctgaagagctagagtgggac
ttaaatgtactgcttaagcactggagtgcgattaaacaagcgtctgattcaaatcctgca
cctttccttatccaccaagaaagtaatgtgattgttcgtgcgatccgtgattacttgcgt
cgtgatattggtgaaattcttatcgacagcaacagcatttacgagcgtgctcttgagcat
attcgtttagtgcgcccagatttcgtcaatcgtgtgaaaaaatacgaaggcgaagtaccg
ctgttcagccatttccaaatcgaaagccagattgaatcggctttccaacgtgaagttcgc
ctgccttctggtggttcaatcgtcattgacccgaccgaagccttgacttccatcgacatc
aactctgcccgcgcaaccaaaggtggcgatattgaagagaccgctctcaataccaaccta
gaagctgcagatgaaatcgcacgccaattgcgtctgcgtgacctcggtggtcttgtggtg
atcgacttcatcgatatgacccctgttcgccaccagcgtgaagtggaaaaccgtctacgt
gaagcagtgcgtgttgatcgtgctcgcgttcaaattggccgtatttctcgctttggtttg
ctggaaatgtcgcgtcaacgtttgagtccttctctggcagaagcaagccatcacatctgt
cctcgttgtaaaggaaccggcgtgattcgtgacaacgaatctttggcactttctgttctg
cgcttaattgaagaagaagcactcaaagacaacacatcgcaagtgcttgcggtggtacct
gtctctatcgcttcttatctgttaaacgagaagcgtcgctcaatcaatcacattgaaaaa
gcgcagcaagttcgcattactatcgtgccaaattccgatatggaaacaccgcactttgaa
gtgatccgcgtgcgtgaaggtgaagagcaagatgttctctcttacctgattccgaaaaag
ctggaagcgatgaaagaagcggaaggcaaagaagtggtcgatgttgagctcaaaccaaaa
cgtattgaagagccagtactgaaaggttttgcagcgcctgcggaagcggttcctgctcca
acaccaaaacctaaagcagaacctcaacctgttgcagaggcacagcaacctgcgcagcct
ggtttctttagccgtgtgtttaaagcgattgcgagcctattctctgcgacaccggaagcg
gccaaagtagaagcgcctgtaacgcagaatagtgaacaagacaaacctcgtcgtgaacgt
aacgagcgtaataatgatcgtcgtcgtaaccctcgtgacaaaaaccgtcgccgcggtaat
gaggaaaacaacgagcgtaacgataaagagacatcaaacaacaaccgtaagccacaagag
cgcaagccaaagcaagagcgtggtgatcgtaacgaacgtaatgaccgcaatgaacgtcca
gaaaccgagcgtccagaacgtcaagatcgtcgtaatagtcgtaataaacgagatgaaagc
aaaacggctaaattgcttgagcaaggtcgccaattagcggctgaagcacaacaagaagtt
aaagccgttgaacctaaagaagagaaagccgcggttgttaaagaacgtcgtcaacgtcgt
aagctctcgaagcaaattcgagtcaaagatcagcttgccgcagaagagttagacaacctg
tctacagctcctgttgacaatgcgttcgatgctccagcgccagttaatctgcctgtaacc
gatgattttgcggattcggctcaagagaataacgagcaagatgatcagaagcagcgtcgt
aatcgccgctcgccacgtcatctgcgcgccagcggccagcgtcgccgtcgcggtcgtgat
cgtcgccctaacccattccgtctgcgtaaaggtggggttgcctctcctgagatggccatg
ggtaaagtgatgcctcgctacgacttagcgccgcgtccacagtcgcgccatgaaactgct
gaaggtgctcaacatgtgactcatgtaacaccgactgcggcaactgcagtagtagaaagc
gaaaaagtggcagcgccacgtgtactcggaggctttgccttcccagaaatggcgatgggt
aaagtcatcgtgcgtcgtgaaactgctgcggttcaacctgagccagtagtgcaagagcca
gtgattgctgacgtgatcgcagagacactcatcgcacccgttgagccggtcgtggttgaa
gctacagtgattgaagctccggtaattgaagagtcagcaacagaaactgctgcgctagaa
accgtagtggcgaaagtcgctgaagtcgaagagccagccacaatcagtgacgaggttgtc
gcacaaacaacagttgaagtgatcgcagacaaaatggcagaaccaattaaggttgttaag
ccagtgtcagtgagtgcaaaatcactcaccgcgaaagcagtcatccaacagccgtacgcc
tcatcgccgatgactaaagcacctggctcagatgacatccgtgaagtgcaggttaacgcc
gcgcctttacgtgctgaacgttaccaagcgcgtggtgcgggtagtcaagtcgcgcgtaat
caagccagtgcgggtatgagtaagccgcaaagcttctaa

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