| Entry |
|
|---|
| Name |
(GenBank) Exodeoxyribonuclease V beta chain RecB
|
|---|
| KO |
|
|---|
| Organism |
vcl Vibrio cholerae O1 LMA3984-4
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:vcl00001]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VCLMA_A2036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:vcl03400]
VCLMA_A2036
Enzymes [BR:vcl01000]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VCLMA_A2036
DNA repair and recombination proteins [BR:vcl03400]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VCLMA_A2036
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
I:complement(2303911..2307537)
|
|---|
| AA seq |
1208 aa
MSADSNKLAVTLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLS
VDQILVVTFTEAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLL
SAERQMDEAAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESSLKAQVVADYWRRQFYPL
PIALASEVRSLWPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQIARISEIKQHW
LAEREEIEPAVTGSDLHKNSQNALLRRLPILDTWAQSETQDLQVPSELEEFTQSGLLAKS
KKGNPPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLS
AALDNDEQGLLGERRTTLYPVAMIDEFQDTDPLQYSIFSRLYLGYPQCGLLMIGDPKQAI
YAFRGADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPV
AASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTASASG
AATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDIERL
LLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERGVLP
MLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAA
QGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDTESATT
WVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSA
MGFLLQDGQEGGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELSQ
AIDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNF
PRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILDLMESEQIESEWLPVLQHLVDTVLSTP
LDGKALRLQQIMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAQAGDLGFHAVQGML
KGFIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLSGAMADHRYDLQYQIYALALHRFL
RSRLAHYNYEQHFGGVFYLFLRGMDGRTDQGVFHTKPSLALLDELDGLIAGRELAQRASK
AGQMELDL |
|---|
| NT seq |
3627 nt +upstreamnt +downstreamnt
atgagtgccgattcaaataagctcgctgttacgctcgatacgttgcgttttcctttgcat
ggagcgcggctgattgaggcctcggcaggcaccggaaaaacctacaccattgccggactc
tatctgcgtctggtgcttggacatggctgcgcggaaactcgtcacgcgcatccactgagt
gtggatcaaattctggtggtgacttttaccgaagcggccactgcagagctgcgtgaccgt
attcgtcgccgcttgcacgatgcgcgcctcgcttttgctcgtggcgcgagtgacgatccg
ctgcttcgctccctgctggctgaatttaccgatcacaacttagccgtctctttgttgctg
agtgccgagcggcagatggatgaagcagcgattttcaccatccacggtttttgccaacgg
atgctgacgcaaaatgcgtttgaatcgggcagtcgctttgaaaatgaattcgtcactgat
gaaagtagtctcaaagcgcaagtggtggccgattattggcgcagacagttctaccctttg
cccattgccctcgcgagcgaagtgcgcagcttatggcctgcaccctctgcactgttggct
gagattgccggttatctttctgggccgccagtcaaactgaccacacctttgatggaaggg
gatttggccgcgctgcaacaagcgcagatagcgcgcattagcgagattaagcagcactgg
ttagcggagcgagaggagattgagcccgcagtaactggctctgacctgcacaaaaatagc
caaaatgcgctgctgcgccgtttgccgattctggatacttgggcgcaaagtgaaacgcaa
gatctgcaagtaccgtcagagcttgaagagttcacccaaagcgggttgcttgccaaatcg
aagaaaggcaatccgccacaattagcgctgtttgaacggatcgaagcgtttcttgccgag
cctgtgtcactcaaaacaccgcttttggtgcatgcgattcatcactgtcgtcattggttg
gcgaaagccaaatccacccatcattggctctcgtttgatgacttgctcactcaactcagc
gctgctctggataatgatgagcaagggctattgggcgagcggaggaccacgctttatccg
gtggcaatgatcgacgaattccaagataccgatccgctgcagtacagcattttcagtagg
ctgtatctgggctatccgcagtgtggattgctaatgatcggcgacccgaaacaggcgatt
tacgctttccgtggcgccgatattttcacttacatcaaagcgcgcaatcaggtgaacgct
cactacaccttaggcacgaactggcgatccagcgcagcgatggtggcggccgtgaaccaa
gtgttcagctctgcgactcatccgtttatttacagtgatgacattccctttcagcccgtg
gcggcaagccctggtgctgataagcgccattggtcactggaagggcaagtacaaccagct
ttgacctattggtggccggaagatctggataaaccacaaagcaaaaccgattactacgcg
caaatggccgaggcgtgtgcggcgcaaattcagcacattttgactgcttcggcctctggc
gcggcaacctttcatcgcggcgaggcgattgaagcgggcgatctggcggtgctggtgcgt
accggtaatgaagcgcgcatggtgcgcgatgcactcagtcagcaaggtatcgctagtgtg
tatctttccaaccgtgatagcgtgtttgccagcgatgtggcgcaagatattgaacgcttg
ctgctcgccgtgtggcagccagaagatgagcgcttgctccgtgcggcggttgcctcgaat
ctgtttgcgttaaccgccagcgagctggatgcgctgaataacgatgaaaacgaatgggaa
cagttgattgccgaatttcgtcaatatcgccgtttgtggagcgagcgcggcgtattgccg
atgctgcgtgcagtattaactcagcgccacattgccgagcgttggctggcggaaagtgaa
ggtgagcgctggctcaccgattatctgcacatcagcgaactcttgcagcaggccacgcgt
gagatcgatagcgatcagggtttactgcgttttctgactcaggcgatggcggatgctgcg
caagggctcggtggcagtgatgagcagatccagcgtctcgaatctgagcggcgcttggtg
cagattgtcaccatccacaaatcaaaagggcttgagtacccgttggtgtttttgccgttt
gtgatgagctatcgcgagagcagtgaaggcaaatattacgatactgaatcggccactact
tgggtcgatttaaccggcaatgaagaggcgttagccaaagccgatcaagaacgtttggca
gaagatttacgcttgctgtatgtggcgctcactcgcgcagtgtatggctgttttattggg
attgcgccgctgcgcaacggcaattcgagccaagagccgacctcggcgcatcgcagtgcg
atggggtttctgctgcaagatggtcaagaaggtggtatcgcggatctgcagcaagcgctg
cttaaacagtgtgaaaacttgccagatgtcgtgcaatgcccgccaccgaagcgtttcgaa
caagcgtatcagccaccccaattggacgagcgagagctgactgcccgtgagttaagccaa
gcgattgatcgccgttggcgagtgaccagttactcaggcttggtgatgcaatcaagtcat
gctcgccatgatcctttgcaagagttgcccttgcttgaagtaggcggttttgatcttgat
agtgcgcaagagcgtgatggagcggcgctggaatctgtcgagcgttcgattttcaatttc
ccgcgtggcgcacgccccggcactttcttgcattcgctgtttgaagaggtggatttccag
caatcggcacacagtgaacccaatactaaaatcatccttgatttgatggaaagtgagcag
attgaaagcgagtggctgccggtgttgcaacacttggttgacaccgtattgagcacgcca
ctggatggtaaagcgctgcgcttacaacaaattatggccgcccagcgtctgaccgagttg
gagtttttattgccgatcgaagtgttggatgcgccaaccctgaatcgcatcacccagcgt
cacgatccgctttcggcacaggcgggcgatctcggttttcatgcggtgcaaggcatgctc
aaaggctttatcgatctggtgtttcaatatcaagggcgctattacgtgctggactggaaa
tccaaccatttaggtgacgatcctgcggcgtatcatccacagcgtttgagcggtgcgatg
gccgatcaccgttacgatctgcaataccagatttacgcgttagcgctgcatcgctttttg
cgcagccgtttagcccattacaattacgagcagcatttcggcggcgtgttttatctcttc
ttacgcgggatggatggccgcaccgatcaaggcgtgttccataccaagccaagcttggcc
ttgttagatgagttggatggattgattgcagggcgcgagctggcacaaagagcgagtaaa
gctgggcagatggagcttgatttatga |
|---|
