Vibrio cholerae O1 LMA3984-4: VCLMA_A2121
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Entry
VCLMA_A2121 CDS
T01871
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vcl
Vibrio cholerae O1 LMA3984-4
Pathway
vcl03410
Base excision repair
vcl03430
Mismatch repair
vcl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VCLMA_A2121
03430 Mismatch repair
VCLMA_A2121
03440 Homologous recombination
VCLMA_A2121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcl03400
]
VCLMA_A2121
DNA repair and recombination proteins [BR:
vcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
VCLMA_A2121
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
VCLMA_A2121
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VCLMA_A2121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AEA79317
LinkDB
All DBs
Position
I:complement(2421998..2423635)
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AA seq
545 aa
AA seq
DB search
MAQLEKAAKALHSFKQLHGIDRAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRM
LGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVV
VTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGM
AEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARR
LVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMK
QEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKL
KGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFEHFCRLFDQLVREE
LDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKH
LKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPDASVKTVRLAYKLDINEFRGNQSLQLMID
YLEAK
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
gtggcacaacttgaaaaagccgccaaagcgctgcactcattcaaacagttacatggtatt
gatcgtgcggttgagttgctgttcgcggcgattgctgagcaaaaacgcatcatagtcgtc
ggtgattttgatgccgatggcgcaaccagttcggcactttccgtgctcgcgctgcgtatg
ctcggtagtcgtaatgtcgattacttagtgccaaaccgttttgaagatggttatggtctg
agccctgaagtagttgatcaagcgattgagcgtggcgcagagatgatcatgaccgtggat
aacggcgtttcatcactggaaggggtgcgttacgccaaacagaaagggctgcaagtggtg
gtcaccgatcatcacttaccgggacaagaactccctgaagtcgatgccatggtaaacccg
aacttgcagcagtgcgcttttccttctaaagcgctggctggggtaggggttgctttctat
ttgatgatggcactttgcgtgcacatgcgtcagcaaggttggtttgccgcgcaaggcatg
gctgaaccgaaattgatggaactgatcgatttagtggctctcggtacggtcgccgatgta
gtgccgcttgatgacaacaaccgtatcttggtgcaccaaggtttgcagcgtattcgtgcg
ggtttagcgcgccccggtattcaagctctgattgaagtcgccaaacgggatgcgcgccgt
ttggtcgctgctgattttggctttgcgcttggaccacggattaacgccgcagggcgtttg
gatgatatgtcgttcggcgttgaacttttgctgtgtaacaacattcacgctgcgcggcgt
atggcgagtgagctggacggcctcaatcaaacccgaaaagagattgaagaggggatgaag
caagaggcggtcgcgttttgtgagcgtttgcaactgagcgatgatcgcgagctgccttac
ggtttagtgctgtttcagcgcgattggcaccaaggggtgatcggcattcttgcttcgcgc
atcaaagagaaataccaccgacccgtgattgcgtttgctgaaggtggtgatggcaagcta
aaaggttcatgtcgctcggttcccggtctgcatatgcgtgatgcactagataaaattgat
acgcaaaacccgggcatcatactcaaatttggtggtcacgcgatggcggctggattaacc
attgaagagcaaaattttgaacatttttgccgattgtttgaccagctagtgcgtgaagag
ctggatgaagcagcactcaaaggcatcattctcagcgatggcgaactgaaaccggaagag
ttttcgctgcataccgccgaattactgcgtgctggtggcccatggggacaagcgtttcct
gaacccctgtttgatggcgaatttaaagtgctgcaccaaaaacttgttggcgaaaaacac
ctcaaactgatgcttgagccgctgtataaaggctttccaaccaatgtgatgatcgacggg
attgcgtttaatgtcgacctacgccgctggccggatgcctcagtcaaaacggtacgtttg
gcgtacaaactcgacatcaacgagtttcgcggtaatcaatcattgcaactcatgattgat
tatctggaagcgaaatga
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