Vibrio cholerae O1 LMA3984-4: VCLMA_A2206
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Entry
VCLMA_A2206 CDS
T01871
Name
(GenBank) RNA polymerase associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
vcl
Vibrio cholerae O1 LMA3984-4
Brite
KEGG Orthology (KO) [BR:
vcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcl03021
]
VCLMA_A2206
Transcription machinery [BR:
vcl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
VCLMA_A2206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
AAA_34
Cas3-like_C_2
Helicase_RecD
AAA_22
WWE
Motif
Other DBs
NCBI-ProteinID:
AEA79401
LinkDB
All DBs
Position
I:complement(2524071..2526989)
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AA seq
972 aa
AA seq
DB search
MSFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDV
VDSQQGWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQI
DRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFS
EADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIE
ALAEQTPGAPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVT
ALFSGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGR
VLFRNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQ
EFEGEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFH
EGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIG
RLDRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILA
AGGGEELEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLV
TFALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHF
ISWEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFL
PVSPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVE
PRVSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQ
LDSLRLIVVAHN
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgctttagggcaacgctggataagcgatacggaaagtgatctcgggttaggt
actgtggtggcgcttgatgcgcgtacagtgaccttgatgtttgcagcatcggaagaaaat
cgtgtgtatgcacgttcagatgcgccggtcacccgtgtgatcttcaatgtcggcgatgtg
gtggatagtcagcaaggctggtcgttacaagttgaacaagtggtggaagaccaaggcgtc
tacacttatctaggcacgcgagtggataccgaagaaagcggtgtcgcgctgcgtgaaatt
ttcctcagtaaccaaattcgttttaataaaccgcaggataagttgtttgccggtcaaatc
gatcgcatggacaacttcgtgctgcgttatcgcgcgctcactaaccaatatcagcagcac
aaaagcccaatgcgtggcttgtgtggtatgcgcgctgggctgatcccgcatcagctgtat
attgcccatgaagtcggtcgccgccatgcaccacgcgtgttactggccgatgaggtcggt
ttgggtaaaaccatcgaagcgggcatgatcatccatcagcaagtgctgaccgggcgtgct
gagcgcatcctgattgtggtacctgaaacgctgcaacaccaatggttggtggagatgatg
cgccgtttcaacctgcacttctcgatttttgatgaagagcgctgtgtcgaagcctttagc
gaggcagataacccatttgaaactcagcagtatgtgctgtgttcactcgatttcctgcgt
aaaagccgccagcgttttgaacaagccttggaagcggaatgggatttgttggtcgtcgat
gaagcacaccatcttgagtggcacccagaaaagccaagccgcgaatatcaagtgattgaa
gcgctcgcagagcaaacgccgggcgcgccgggcgtattgctattgacggcaacgcctgag
cagttaggtcgtgaaagccactttgctcgtctgcgcctgctggatgcagatcgtttctac
gattacgaagcctttgttaaagaagaagagcagtatgcaccagttgccgatgcagtcact
gcgctgttcagcggtgagaagctaagtgatgaagcgaaaaacaaaatcactgagctattg
tctgagcaagatgtggagccgctgtttaaagcgttggaaagccacgccagcgaggacgaa
attgctttggctcgccaagagctgattgacaatctgatggatcgccacggtactggtcgc
gtgctgttccgtaacacgcgtgccgctatcaaaggcttcccagtgcgtaatgtgcatttg
ctgccattggagattccttctcaatacaccacgtcaatgcgtgttgcgggcatgctcggc
ggtaaactgacgccagaagcgcgcgcgatgaaaatgctctacccagaagagattttccaa
gagtttgaaggcgaggagtcaagctggtggcaatttgactcgcgcgtcaactggctgctc
gaaaaagtcaaagccaaacgcagcgagaagatcctcgtcatcgcatcacgtgccagtacc
gccttgcagctagagcaggcactgcgtgagcgtgaaggcattcgtgcaacggtattccat
gaaggcatgtcgatcattgagcgtgacaaagccgcggcttattttgcccaagaagagggc
ggtgcgcaggtactgatctgtagtgaaatcggatctgaaggccgtaacttccagtttgct
aaccagttggtgatgttcgatctgccgttcaacccagacttgcttgaacagcgtatcgga
cgtttggaccgtattggtcaaaaacgagatatcgatgtgtacgtgccgtacctgaccgaa
acgtcacaagcgattttggcgcgttggtttcaagaaggtttgaatgcctttgcggaaacc
tgcccaaccggtcgtgcggtgtatgacgccttcgctgagcgtttgatccccattctggct
gctggtggcggtgaagagttggaagtgatcatcgaagagtcagccaagctcaacaaaaca
ctgaaatcgcagctggaagtggggcgtgaccgcttgttggaaatgcattcgaacggtggc
gaaaaggcacagcagattgctgagcagatcgcgaaaaccgatggcgataccaatctggtg
acgtttgctttgagcctatttgatgcgattggtctgcatcaggaagatcgtggcgagaat
gcgttggtggtcactcctgctgaacacatgatggtgccaagctatccgggcctcccttat
gaaggcgccaccattacttttgatcgtgacaccgcactgtcgcgtgaagatatgcacttc
atcagttgggaacaccccatggtgcaaggtggcattgatttgctgatgagtgaaggggtg
ggcacttgcgcggtgtcgctgttgaaaaacaaagcactgccagtgggtaccatcttgctg
gagctggtgtatgtggtggatgcccaagcgccgaaacgcagtggcatcagccgcttcttg
cctgtctcgccaatccgaattctgatggatgcgcgcggtaatgatctctcttcgcaagtg
gagtttgaaagctttaaccgtcagcttagccctgtgaatcgtcatttggccagcaagttg
gtgagctcagtacagcatgacgtgcatcgtttgattacggcaagcgaaactgcggttgaa
ccacgagtgagcgcgattcgtgaacaagcgcagcgtgatatgcagcagagccttaacagc
gagttggagcgtttgctggcactcaaagcggttaacccgaacattcgtgatgaagagatc
gaagtgctggatcagcaaatcaaagagctgactggctatattgcgcaggcgcagtatcag
ctggattcactgcgtttgattgtggtggcacacaactga
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