Vibrio cholerae O1 LMA3984-4: VCLMA_B0179
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Entry
VCLMA_B0179 CDS
T01871
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vcl
Vibrio cholerae O1 LMA3984-4
Pathway
vcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VCLMA_B0179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcl03019
]
VCLMA_B0179
Enzymes [BR:
vcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VCLMA_B0179
Messenger RNA biogenesis [BR:
vcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VCLMA_B0179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Utp25_C
ERCC3_RAD25_C
HI1480
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AEA79824
LinkDB
All DBs
Position
II:complement(211158..212552)
Genome browser
AA seq
464 aa
AA seq
DB search
MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL
ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM
CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ
NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE
GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT
DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER
LTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSAAENKPKAGH
RGQPTGQARTAKKGGTHSAPKKPANRPRRSSSKPVTKSSSAKPI
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctcgctcggtctgtctgcgccaatccttaaagctattgaagagaaagga
tacaacacgccttcaccgattcagttacaggctattcctgcggttttagcaggcaaagac
gtgatggccgcagctcaaactggcacaggaaaaacggctggctttacgctacccatttta
gaattgctggcaaaagggccaaaagttcgcgccaatcaagttcgtgctttaatccttacc
ccaacgcgtgaactggccgcacaaatccaagacaatgtcatgctctatggccgccatcta
ccgctcaagagcgcggttgtgtttggtggtgtgaaaattaacccacaaatgcagcgaatg
tgtaaaggtgcggatatcttagtggcaaccccaggccgcttaatggatctgtataaccaa
aatgcggtcaaatttgatcagttggaaattttggtacttgacgaagcagatcgcatgctc
gacatgggctttattcgtgatattcgtaagatactgaaattattgcctgaaaagcgccaa
aacctactgttttcagccaccttctcgaccgaaatccgcgaacttgctaaaggcttggtg
aataaccccgtcgaaatctcagtcagcccagccaactccacggcaagaaccgttgagcag
tgcatttatcctgctgatgtgaaaaagaaaccggacatgctggtgaaattggtcaaagag
gggaattggcaacaagtgctggtatttatgcgtaccaagcatggtgccaaccgcttagcg
acctatctcaacgagcaaggtttaaccgcggccgcgattcacggcaataagagccaaggc
gcacgcacccgagcactggcggattttaaagcgggagaggtgcgtattctggtcgcaaca
gatattgctgcgcgtggtattgatatcccgcagctgcctcaagtggtgaattttgaattg
ccgaaaattgctgaagattacgtgcaccgaattggccgaacaggccgtgcaggtgaagtc
ggtaaagcgatttctttggtgagtgccattgaagcaccggaattatttgcgattgagcgt
ttaacgcaagccttactgccccgtgtaaatttagcgggatttgagccaaccaaccaactc
cctgagtcaaagttagacactcgacctttgaaaccgaaaaagcccaaaaagcctaaaaag
gtagagggagctggagaaaacaaaggcagcgcagctgaaaacaaacctaaagctggccac
cgaggtcaacctacagggcaagctcgcacagcgaaaaaaggcggcactcattcagcgccg
aaaaaacccgcaaaccgcccccgtcgcagttcttcaaaaccagtgacaaagtcatcatcg
gctaaaccgatttag
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