Vibrio cholerae O1 LMA3984-4: VCLMA_B0319
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Entry
VCLMA_B0319 CDS
T01871
Name
(GenBank) Exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vcl
Vibrio cholerae O1 LMA3984-4
Brite
KEGG Orthology (KO) [BR:
vcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcl03400
]
VCLMA_B0319
DNA repair and recombination proteins [BR:
vcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VCLMA_B0319
Archaeal homologous recombinant proteins
VCLMA_B0319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
Motif
Other DBs
NCBI-ProteinID:
AEA79958
LinkDB
All DBs
Position
II:347474..350515
Genome browser
AA seq
1013 aa
AA seq
DB search
MRPLKLILQAFGPFAGREEIDFTELGDAPLFLINGATGAGKSSILDAICYALYGETTGSE
RTGDQMRCDYADPECLTEVSFEFELAGARYQITRQPDQEIPKKRGEGMTKKSHSATLVAL
KADGNELIANKPNPVAKAVIELMGLDVKQFRQVMVLPQGKFRELLTANSKEREQIFGQLF
QTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQTELTELAPVLTHAQ
SQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIATHQEQASHIEMLRQQRQQAQKA
ARLTAVHQQWHQAQKNLLQAKLKVEQQQTLLQQAKAQQQQAQQVSQQASLACEEVPKLNE
QRITWQRAEQKLLAQENVQQAVAKAERELQLATQNALNLQHASEKLEQELQNQRLEWEQQ
QRQLTRLEVQKARMNQLVQQVQAREREQSLLNELQTAQQALLRFEQQHRHIQTQAEQAKL
TADKLEFAWHTQRAAELALALTQNEPCPVCGSLEHPNKAQYSGDVVTKVQVEKARQQQQD
WVQRQQEAFHAWQQQGFKTEQIAQNLTTLSSELTLQQVALLNELIEQQQILHSDIAALQQ
LNPDLLKRQIEEGEQRLAHTKMTLEKQNQNQQQAWQTLAQLQAELASLRQEIPPELSDLD
TLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQFASVQAAHQAAIEAHRESQRQQEETTS
AWLQGLLHSGFSDESAYLAARLTDEAIGNIERQIAQYEERSAMLSGEQQALSRKLAEKNR
PELEPLLVKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQLADLYQKNRALEAEYQVVGT
LSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGNVGSGL
DLMVEDSYSGKWRDVATLSGGESFMAALSLALGLSDVVQSYSGGIRLDTLFIDEGFGSLD
PESLDLAIQTLIDLQQGGRTIGIISHVTELKEQIGLRLDVLATRMGSTLRLIT
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccgttaaaacttatcctccaagctttcggcccttttgccggacgagaagagatt
gactttactgagctgggtgatgctccactgtttttgatcaatggagcaacgggagcagga
aaaagctcgattctggatgcgatttgctacgccttgtatggcgaaaccacgggcagtgag
cgtactggcgaccaaatgcgctgcgattatgcggatcctgagtgtctcaccgaagtcagt
tttgagtttgagctggccggggcgcgttatcagatcacccgtcagcccgatcaagagatc
ccgaaaaaacggggtgaagggatgacgaagaaatcccattccgctactttggttgcactg
aaagcggatggaaacgagctgattgccaacaagcccaatcctgtcgcgaaggcggtgatc
gaattgatgggacttgatgttaagcaatttcgccaagtcatggtcttgcctcaaggcaag
tttcgtgagcttttaaccgccaattcaaaagagcgtgagcagatttttggtcagctcttt
caaacccagctctacagccaaattgaacgggcgctgtttgagcgcgctgcgggtattcgt
aaagagaaagaagagtttgatcagcagatcaaaggtacgttaagtgtcgtcggactggaa
agtgaagagcagttacaaaccgagttgaccgaactggccccagtattaacccatgcgcaa
tcacaactcaaagctgagcaacagcagtgggatgaaacaaaagcacactatcaagctgcg
cttgagttagaacaacaatttatccgcaagcagcaattggtggtagaaatcgccactcac
caagagcaggcttcgcacatcgaaatgctgcgccagcaacgccagcaagcccaaaaagca
gcgcgtttaaccgccgtccatcaacagtggcaccaagctcaaaaaaacctactgcaagct
aagcttaaggttgagcagcagcagactctgttgcaacaggcgaaagctcagcagcaacag
gctcaacaggtcagtcagcaagccagtttagcctgtgaagaagtacccaaattaaacgag
caacgcatcacgtggcagcgtgctgagcaaaaattgctggcacaagaaaatgttcagcaa
gcggtggccaaggctgagcgtgaactgcaactggcgacacaaaatgcgcttaatttgcag
catgcgagcgaaaagctagagcaagagctacaaaaccaacgactcgaatgggaacagcaa
cagcgccaattaacgcgcttagaagttcaaaaagcgcgaatgaatcagttggtgcagcaa
gttcaggctcgcgagcgagaacaatccctactcaatgaattacaaactgctcaacaagct
ttattgcgctttgagcagcaacatcggcacatccaaactcaggccgaacaagcgaaactg
accgcggataaactggagtttgcatggcatacccagagggctgcggagcttgctcttgca
ctcacacaaaatgaaccttgtccggtatgcggcagtttagagcatcccaataaagctcaa
tattcgggtgacgttgtcaccaaggttcaggttgaaaaagccagacagcagcaacaagat
tgggtgcagcgtcagcaagaggcattccatgcttggcagcaacaagggtttaaaaccgag
cagatagcgcaaaatctcacgactttatcgagtgagctaactttgcagcaagtggcgtta
ttgaacgagctcattgaacagcaacaaatactgcacagtgatattgctgcgctacaacag
cttaatcctgatttgctgaaacggcagattgaagagggggagcagcggttagcgcacacc
aaaatgacgctcgaaaaacagaatcaaaaccagcaacaagcttggcagactttggctcag
ttacaggcggaattggcgagtttgcgccaagaaatcccaccggagctgtccgatcttgat
actttacgaagcgcgattgggcgtgtgcagaaccaaatagaaatcttacaaaaagcggag
catacggctcgtgaacagtgggtgcaggcgcaaaagcagtttgccagtgtgcaggcggct
catcaggcggcgattgaagcgcaccgtgagtctcagcgtcagcaggaggaaaccacaagc
gcatggctgcaagggttactccattctggatttagcgatgagtccgcctatcttgccgct
cgtttaaccgatgaggctatcggcaatatcgagcgccaaatcgcccagtatgaagagcgc
agtgcgatgctcagtggcgaacagcaagccttatcacgtaaattagcagagaaaaatcgc
ccagagctggaaccacttcttgtcaaagtaactcaagctgaagaaaaaatggcactggcg
ttgcaggcgtttacgcaacatcaatcgcggatggatggtttgcaacgtgtcgccaagcaa
ctggcggatctgtaccagaaaaaccgtgcattagaagccgaatatcaggtcgtgggcacc
ttaagtgatattgcgaatggcaaaacgggcgctaaagtcagcttacatcgctttgtgctt
ggcgttttgctggatgatgtcttgttacaagcttctcaacgactgatgaaaatgagccga
ggccgctatttactcaaacgtaaagaggaacgcgctaaaggtaatgtgggctcaggattg
gatttgatggtcgaagatagttacagcggtaaatggcgtgatgtggcaaccttgtccggt
ggtgaatcgttcatggccgccttatcgcttgcgcttggtttgtccgatgtagtgcagtct
tacagtggtggtatccgtcttgatactctgtttattgatgaaggttttggtagtttggat
ccggaatctttagatttagcgatccaaaccctaatcgatcttcagcaaggtggccggacg
ataggaatcatctctcatgttaccgagctgaaagagcagatcggtctaagattggatgtg
ttggcgacaagaatgggtagcacgctgcgtttaatcacataa
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