KEGG   Vibrio cholerae O1 LMA3984-4: VCLMA_B0550
Entry
VCLMA_B0550       CDS       T01871                                 
Name
(GenBank) ATP-dependent RNA helicase VCA0768
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
vcl  Vibrio cholerae O1 LMA3984-4
Pathway
vcl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vcl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VCLMA_B0550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcl03019]
    VCLMA_B0550
Enzymes [BR:vcl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VCLMA_B0550
Messenger RNA biogenesis [BR:vcl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     VCLMA_B0550
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA AAA_22 Helicase_C_2
Other DBs
NCBI-ProteinID: AEA80180
LinkDB
Position
II:complement(600242..601510)
AA seq 422 aa
MSELSITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAF
GLPLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTS
MKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL
RRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRE
LLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAG
KVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQ
PQLEAIERLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRSSEKRKLKAQLKIHAQRGKK
AR
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgtcagaactctccatcactttttcgcaattaggcttggattctcgtctgctgaataca
ttgagcgagcttgggatcgtcaatcccacgccaatccaacagcaagctattcctcatgta
ttgcaaggaaaagatgtactggcaggggcgcaaaccggaaccggtaaaacggcggcattt
ggcttacctttgatccaacgctttattgagcagccttggcagcgtgaagcaaacagcaaa
gagatccgagcgttagtgctggtgccaacgcgtgagttagctcagcaagtattggatagc
ctacaagcctacgcgaaaggaacggagcttaagatcgtagccgtttatggcggcacgagc
atgaaggtacagctcaatcatttgcgtggtggtgtggatattttgattgcgacgccgggg
cgtttgctcgatcacgcccatgtgaaatcgctgtttttgggcaaagttgaagtgttggta
ctcgatgaagcggatcgcatgctggatatgggctttatgccagatttgcagcgcgtgctg
cgccgtttatcgccactgcgtcaaacgctgtttttctctgcaacgtttgatagcaaaatc
aaagcggtcgcgtatcgcatcatgcgtgaccctatcgaagtgcaggtgacgccatccaat
tccacggcagaaaccgtgcagcagatggtgtatccggtggataaaaagcgcaaacgcgaa
ctgctctcttatctgatcggttcgaaaaattggcagcaagtgttggtgtttaccaaaacc
cgtcaaggcagcgatgcacttgcggaagaactcaagttggatggcataaaagcggtgtcg
attaatggcgataaaagccaaggtgcacgccaaaaggctttggatgattttaaagcaggc
aaagtgcgtgctttgattgcgaccgatgtcgccgcacgtgggttagatattgcccagctt
gagcaagtggtgaactacgatatgccatttaaagcggaagactatgtacatcgtattggg
cgtacggggcgcgcaggtttagccggattggcggtctctttgctgtcgcatgatgaacag
ccacaactcgaagcgattgagcgtttactcaatacacgtctgccgcaagagtggttgaaa
ggttttgagcctagccctgtggtgcatgaggaaaattcaccgcgtcgctcggctggccgt
tcgtcagaaaaacgcaaactaaaagcacaactgaaaatccatgcgcagcgcggtaaaaaa
gcgcgttaa

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