Vibrio cholerae O1 LMA3984-4: VCLMA_B0583
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Entry
VCLMA_B0583 CDS
T01871
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vcl
Vibrio cholerae O1 LMA3984-4
Brite
KEGG Orthology (KO) [BR:
vcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcl03016
]
VCLMA_B0583
Enzymes [BR:
vcl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VCLMA_B0583
Transfer RNA biogenesis [BR:
vcl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VCLMA_B0583
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AEA80212
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All DBs
Position
II:633344..635383
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AA seq
679 aa
AA seq
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MMFQDNPLLAQLKQKIQETLPKKEGTIKASDKGFGFLEVDSKTSYFVPPPYMKKCLHGDK
VVAFIRTENEREVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKMSLKAKTKKGL
NEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAG
IDDWQLKDDADLVREDLTSLPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYI
TPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTISKHGVIG
DDIRFFAAHIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRETH
AVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFN
THAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQS
YSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPDETVGEELA
LHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGMRVRLLENGAMAFIPGA
LILDNKERIECNGEDGTVLIDKEVVYKLGDVLEIVLAEVNQENRSLVGKPTQVFADLVSE
TQTNAEQPAEGAENNEPQA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgatgttccaagacaatccgctcctcgcgcagcttaaacaaaaaatccaagaaactctg
cctaagaaagaaggcaccatcaaagccagtgacaaaggttttggcttcctcgaagtcgat
agcaaaaccagctactttgttccgcccccttatatgaagaagtgtttgcatggcgacaaa
gtcgtagctttcatccgcaccgaaaatgaacgtgaagtggctgagccttctgaacttatc
gagcaatcgctaactcgcttcattggtcgcgtaaagctatttaaaggcaaactcaacgtt
gcgcccgatcatccacaactgaaaaagatgtcgctgaaggcgaaaaccaagaaaggcctc
aacgaagcggacttccaagaaggtgattgggtagtcgctcaccttgtgcgccacccgctg
aaaggtgacgatggtttctttgtgcagatttcacacaaaatcactgatgctaatgacaaa
attgccccttggtgggtgacattagcagaaaacgatctgcctaacagcgagccagcgggt
attgacgattggcaactgaaagatgatgcagacttggttcgtgaagatctgacctcactg
ccttttgtaaccatcgatggtgaatcgaccaaagatatggacgacgcactttacgcacag
caactgccaaacggtgattttgcactgactatcgcgattgccgatccaaccgcttacatc
accccagaagatgagatggacaaagttgctcgtgagcgtggctttaccatttatttgccg
ggtcgcaacattcctatgttgccacgcgatctggccgatgaactttgctctctgatggaa
aaccaagttcgtccagcgctatgctgctcagtcaccataagtaaacatggtgtgattggc
gatgatattcgcttcttcgcagcccacatcaaatcacatgcacgtctagtgtatgaccat
gtttctgactggttggagactggtagctcggagcaatggcaaccaagcgaagaaattgcc
caagtagtgcgcgacctctacgctttctcacaagcacgtgcgaactggcgtgaaacccat
gcggtggtattcccagaccgtccagactatcgctttgaactgagcgccgataacgatgtc
gtggcgattcatgctgacatgcgccgtacggcaaaccgcttggttgaagaatcgatgatc
actgcaaacatctgtgcgggtaaaacgctgcaaaccacgtttggttttggtgtattcaat
acccacgctggttttaaagctgagaaaatggccgatgtcgttgagctcatggcggtcaac
ggcgcaccgaatgcggatgcagaaacgctcgcaactgtagaaggctttgctgctctgcgt
cgctggctagccacacaagaaaccagctacctcgataatcgtattcgtaaataccaaagc
tacagtgaaattggcaatcagccccttccccacttcgcgatgggccttgatgtgtacgca
acttggacttcaccgattcgtaaatacggcgacatgattaaccaccgtctgctgaaagcg
cacattctcggtaaagccccggtgcaaacgccggatgaaacggtcggtgaagaactggct
ctgcaccgtaaacaccacaaaattgctgaacgtaatgtggcagattggctctatgcgcgc
acactggctgatgagccagcgaaagaaacccgcttccaagctgagatctttgatatcaac
cgtccgggcatgcgtgttcgcttactcgaaaacggcgcaatggcctttattccgggagcc
ctgatcctcgataacaaagagcgtatcgagtgtaatggtgaagacggtacagttcttatc
gataaagaagtggtgtacaaactcggtgatgtgctcgaaatcgttctagcagaagtcaat
caagaaaaccgaagcttagtgggtaaaccaacgcaagtgtttgctgatctggtttcagag
acgcaaaccaatgcggagcaacctgctgagggcgcagaaaataacgagccacaagcttaa
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