Vibrio cholerae O1 M66-2: VCM66_0178
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Entry
VCM66_0178 CDS
T00891
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vcm
Vibrio cholerae O1 M66-2
Pathway
vcm03420
Nucleotide excision repair
vcm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VCM66_0178 (uvrD)
03430 Mismatch repair
VCM66_0178 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcm03400
]
VCM66_0178 (uvrD)
Enzymes [BR:
vcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VCM66_0178 (uvrD)
DNA repair and recombination proteins [BR:
vcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VCM66_0178 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
VCM66_0178 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Speriolin_C
Motif
Other DBs
NCBI-ProteinID:
ACP04512
UniProt:
C3LQF4
LinkDB
All DBs
Position
I:180197..182368
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AA seq
723 aa
AA seq
DB search
MIDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMA
VTFTNKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQ
QRLLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPAHINAFDPVTQTYLKLYTAYQEA
CDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQ
SNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANN
SERMGKQLWTEGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQS
RVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGD
KTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVL
TDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAAL
EAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCY
VGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGRFS
QTVVKESFNETGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYARL
EKV
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatccctctctattgctcgacggtctcaacgataaacaacgcgaagcggtggca
gcgccactggaaaacttactgattttggccggtgccggcagtggtaaaacccgcgtactg
gtgcaccgaattgcgtggctgatgtcggtggaagaagcctcaccgttttcggtgatggcg
gtgacctttaccaacaaagctgcagccgaaatgcgtggccgaattgaagagctgatgcat
ggcaccgcctctggcatgtggtgtgggactttccacggtatttgccaccgtatcttgcgc
gctcactatctggacgctaagttgctggaagatttccagattatcgacagtgacgatcag
cagcgtctgctcaaacgcctcatcaaagcgcacaatctggatgataaacagtggccggca
cgccaagtcgcgtggtggatcaacaatcaaaaagatgaagggttgcgcccggcgcatatc
aacgcctttgatccggttactcaaacttatctcaagctgtacaccgcttaccaagaagcg
tgcgatcgcgccggcttggtcgatttcgccgagattttgctgcgcgccctagagcttctg
cgtggtaatcagcacattcgcgagcattatcaggcgcgctttaagcacattttggtcgat
gaattccaagacaccaacgcgattcaatacgcgtggctgcgcatgatggcgggtgcacag
tcgaacgtgatgattgtcggtgatgatgaccaatcgatatacggctggcgtggcgcgcga
gtggaaaacatcgaaaaatttacccgcgaatttccgagcgtgaataccattcgactggag
caaaactaccgctccactaagaccattttggaagcctcaaatacactgatcgccaataac
agcgagcggatgggcaagcagctatggaccgaaggtttggttggcgaacccatttcggtg
tattcggcgtataacgagctcgatgaagcgcgctttgtggtcagcaagatcaaaggttgg
caggagcaaggcggcacactgaccgattgcgcgatcttgtatcgcaacaacgcccagtca
cgggtattggaagaggctttattgcaagcgagcttggcctaccgcatttatggcgggatg
cgttttttcgaacgccaagagatcaaagatgcgctgagttatctgcgtttgattaataac
cgcaatgacgacaccgcctttgagcgagtgattaatacgccgccgcgcggtttgggtgat
aaaaccctagagaccattcgctttgccgcgcgcgatcgtggctgcaccttgtgggatgcc
agtgtcggtctgcttaatgaccaagtcttaactgggcgtgcagctagcgcgctgagtcgc
tttgttgaactgatcaatgctttggaagaggaaggcatcgacatgccgctgcatgtgctc
acggaccacgcggtaaaaacctctggtctgctggagatgtatcagcaagaaaaaggcgaa
aaatccaaagcgcggattgaaaacttggaagagctggtcacggcgacgcgccagtttgaa
aagccagaagaagcgcaggatatgaccatgctgaccgcgtttttgacccatgcggcgctt
gaagcgggtgaaggccaagctgatgagcatgatgatgcggtacagctgatgactttacac
agtgccaaaggattagagttcccgctggtgtttatggtcggtgtggaagagggcatgttc
ccgagccaaatgtctgccgaagaggccgggcgtctcgaagaggagcgtcgcctgtgttac
gtcggtatgacccgcgcgatgcaaaagctctacatcacctacgcggaaatgcgccgcttg
tacgggcaagataagtatcacaaaccctcacgctttattcgtgaactgccagaaggctgt
ttggatgaagtacgcatgaaggcgcaagtcagccgcccaaccagcacaggacgctttagc
caaaccgtagtcaaagaaagctttaacgaaaccggttttaatttgggctcacgagtccgt
catccgaaatttggtgaaggcaccatcattaactttgaaggcagtggcccgcaaagccga
gtgcaagtggcgtttaatggcgaaggcattaagtggttagtgacggcttacgcgagatta
gagaaggtgtag
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