Vibrio cholerae O1 M66-2: VCM66_0292
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Entry
VCM66_0292 CDS
T00891
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vcm
Vibrio cholerae O1 M66-2
Pathway
vcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VCM66_0292 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcm03021
]
VCM66_0292 (rho)
03019 Messenger RNA biogenesis [BR:
vcm03019
]
VCM66_0292 (rho)
Transcription machinery [BR:
vcm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VCM66_0292 (rho)
Messenger RNA biogenesis [BR:
vcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VCM66_0292 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
OB_RNB
AAA
S1CSD-TOTE-2
DnaB_C
Motif
Other DBs
NCBI-ProteinID:
ACP04621
UniProt:
C3LQR3
LinkDB
All DBs
Position
I:303022..304281
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN
DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaacagaactgaagaacacccctgtgtctgatctggttaagcttggcgaaagt
ctgggccttgaaaacctggcacgcctacgcaaacaagacattattttcgcaatcctcaaa
gcacacgcaaaaagtggtgaagacatttttggcgatggggttctggaaattcttcaagac
ggttttggtttcttacgtagtgcagacagttcataccttgctggccctgacgacatctat
gtgtcacctagccaaattcgtcgctttaacctacgtacaggcgactcaattgccgggaaa
attcgtccgccgaaagagggtgaacgttactttgcattgctcaaagtgaacactgtaaac
gatgaccgtccagacaacgcccgcaacaaaatccttttcgagaacttaactcctctacac
gccaatgaacgtatggtgatggaacgtggcaatggctccacagaagacatcacggcgcgt
gttctcgatttggcagcaccgattggtaaaggtcaacgtggtttgatcgttgctccgcca
aaagcgggtaaaaccatgctgctacaaaacatcgctcaaagcatcgccagcaatcaccct
gagtgtgtgctgatggtactgctgattgacgagcgtccagaagaagtgactgagatgcag
cgcctagtaaaaggtgaagtggttgcttcaacctttgatgagccagcatcgcgccacgta
caagtggcagaaatggtgattgaaaaagccaaacgtctggttgaacacaagaaagacgtg
gtgatcctactggattcaattactcgtctagcgcgtgcctacaacactgtggttcctgca
tcaggtaaagtactgaccggtggtgtggatgcgaacgcattgcatcgtcctaagcgtttc
tttggtgcggcacgtaatgtagaagaaggtggtagcttgaccatcatcgctactgcactg
gttgataccggttctaagatggatgaagtgatttatgaagagttcaaaggtacaggtaac
atggaactgcacttgaaccgtaagattgctgaaaaacgtgttttcccagctatcgacttc
aaccgttcaggtacgcgtcgtgaagagttactgactaagaccgatgagctacaaaagatg
tggattctacgcaagatcgttcacccaatgggcgaaaccgatgcgatggaattcctgatt
gataagttagccatgaccaaaaccaacgatgagttctttgacgcgatgcgtcgacagtaa
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