Vibrio cholerae O1 M66-2: VCM66_0404
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Entry
VCM66_0404 CDS
T00891
Symbol
cafA
Name
(GenBank) cytoplasmic axial filament protein
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
vcm
Vibrio cholerae O1 M66-2
Brite
KEGG Orthology (KO) [BR:
vcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcm03019
]
VCM66_0404 (cafA)
03009 Ribosome biogenesis [BR:
vcm03009
]
VCM66_0404 (cafA)
Messenger RNA biogenesis [BR:
vcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VCM66_0404 (cafA)
Ribosome biogenesis [BR:
vcm03009
]
Prokaryotic type
rRNA processing factors
VCM66_0404 (cafA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACP04730
UniProt:
C3LRF0
LinkDB
All DBs
Position
I:429933..431402
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AA seq
489 aa
AA seq
DB search
MSAELLLNVTPSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVDI
GLDKAAFLHASDIVPHTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLT
TDITLPSRYLVFMPGASHVGVSQRIESEAERERLKKIVSHYCDEHGGFIIRTAAEGANEK
ELTQDAAFLKRLWSKVIERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFE
NLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAM
TTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRV
LTSLETALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETV
CFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYN
QEQFDVVMM
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcagagttgctgttaaacgtcaccccgagtgaaactcgggtggcgatgattgaa
gggggaatccttcaggaaatccatattgaacgtgaagccaaacgcggcattgttggcaat
atttacaaaggcaaagtcagccgggtattaccgggcatgcaagctgcttttgtggatatt
ggactcgacaaggccgcttttttacatgcctcggatattgtgccccacaccgagtgtgtt
gccgaaagtgagaagcagcagttccaagtgcgcgatatttccgagctggtgcgccaaggg
caagatattgtggtgcaagtggtcaaagacccgcttggtactaagggtgctcgcttaact
accgatattacgctcccttctcgttatctggtgtttatgccgggggcaagccatgttggc
gtatcacaacgcatcgaaagcgaagcggagcgcgagcgcctaaagaaaatcgtttctcat
tattgcgatgagcatggcgggttcattatccgaaccgcagcagaaggggcaaacgaaaaa
gagttgactcaagatgcggcgtttcttaagcgtttgtggtcaaaagtgattgagcggcgc
agcaaatacaagaaccgctctatgctgtatggcgagcttggtctggcgcagcgcattttg
cgtgactttgtcggcaccgaactgaccaaaattctcatcgattcacgacaagagttcgaa
aacctcaaagagtttacctccgaatatgtccctgagctaacggctaaattagagctgtac
cacggcgataagcccatttttgacatgtacgatacggaaaatgagattcagcgctctctc
gaacgcaaagtggagctcaaatcgggggggtatctgatcatcgatcagaccgaagccatg
accacgattgacatcaatacgggcgcgtttgttggccgccgtaatctcgaagagaccatt
ttcaacaccaatattgaagcgactcaagccattgctcgtcagctgcgtctgcgcaatctg
ggtgggattatcattattgactttatcgatatggcgtcggatgagcaccgtaagcgagtg
ctcacctctttagagacggcgttgatgaaagatcgggtcaaaaccaacatcaacggcttt
actcagcttgggttggtggagatgacgcgtaaaagaacccgagaaagcattgaacatgtg
ctctgttcgacttgtccaacgtgtgaagggcgaggcagcgtgaaaacggtggaaacggtg
tgctttgagattttgcgcgaaattacgcgcgtgaatcgagcctacgatgcggacaaattc
gtggtttatgcttcaccggcagtggccgatactttgcaaggtgaagagtcacatgccttg
gcggagttggaagtgttcattggtaaagaagtgcgaattcaagcagaaccactctacaac
caagagcaatttgatgttgtgatgatgtaa
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