Vibrio cholerae O1 M66-2: VCM66_1189
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Entry
VCM66_1189 CDS
T00891
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vcm
Vibrio cholerae O1 M66-2
Pathway
vcm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
VCM66_1189 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcm03400
]
VCM66_1189 (sbcB)
Enzymes [BR:
vcm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
VCM66_1189 (sbcB)
DNA repair and recombination proteins [BR:
vcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
VCM66_1189 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VCM66_1189 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VCM66_1189 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ACP05506
UniProt:
C3LLT0
LinkDB
All DBs
Position
I:complement(1264628..1266052)
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AA seq
474 aa
AA seq
DB search
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE
AALITGITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFID
PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHD
AMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLV
HLNKCPILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQES
DVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTD
TEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaagaacaccagcccacattcttctttttcgactacgagacttggggagtcaat
cccgcaaaagatcgtcctagtcagtttgcgggtgtgcgtaccgatatggacttcaacatc
atcggcgagcctttggtaatttactgtcagctgcccaacgactatttgcccgcccctgag
gccgcattgatcacagggatcacccctcaaaaagccaatagccaaggtctcgcggagccc
gaatttatcgcgcgtattcatgctgagctctccacacccaataccatcaacctaggttat
aacagcatacgttttgatgatgaagtgacgcgctacacctgctatcgcaactttatcgac
ccctatgcttggagctggcaacacggcaattcccgttgggatctgctggatgtgcttcgc
gcgtgtcatgctttgcgtcctgaaggtatcgagtggccggaaaatgatgacggcttcacc
agctttaaactggaacatctttctgttgccaacggcattgagcacagcaacgcgcacgat
gcgatggccgatgtgattgccaccattgaactggcgaaaaaagtcaaagccgcgcagccg
aaattgttcgactacttcttcactatgcgccacaaacgaaagctgacagaactgattgat
attgtgaaccaaactccgctgatgcatgtttctggcatgcttgggcgtgagcgtcactac
actagctggattgtgcctattgcttggcatccaaccaatcaaaatgcggtgattgtggtg
gatttgggtaaagaccctcagccgctgctggagctcgatgccgaaacgctgcaagcgcgt
ctctatacgcggtatgaagacctagcgccggatgagctaccagtacccgtgaaattggtg
catctcaataaatgccctattctcgctccggccaaaaccttgaccgcagaaaatgcacaa
aagattggtattgaccgcgaacagtgtctcgcgcacttgaatgtgattcgtcaacacccc
gagattcgtgaaaagctggtgacggtatttagccaagagcgcgaatttaaccaagagagt
gatgtggatagccaactctatgccggctttttctccccagccgatcgcgcggcgatggag
atcatccgcaccactgcaccggagaatctgggcagcttagcgatccgggtggccgataag
cgcattgaaccgctgctgtttcgttatcgtgcgcgccattatccccacaccttaaccgat
accgagcaacgccgctgggcagcgcattgtcgtgactatttcgagcgcaatctagaaggt
tatatgttgaatttggaaaatctggtgcatgaacatcaagctgatccaaagaaaatggcg
attttaaaatccgtctaccattacgtggaaaaactcgcttgctaa
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