Vibrio cholerae O1 M66-2: VCM66_1908
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Entry
VCM66_1908 CDS
T00891
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vcm
Vibrio cholerae O1 M66-2
Brite
KEGG Orthology (KO) [BR:
vcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcm03016
]
VCM66_1908 (rnd)
Enzymes [BR:
vcm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VCM66_1908 (rnd)
Transfer RNA biogenesis [BR:
vcm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VCM66_1908 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ACP06211
UniProt:
C3LNT5
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All DBs
Position
I:complement(2072889..2074034)
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AA seq
381 aa
AA seq
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MSNNCELSVNYQIISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENL
SLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGY
GLSTGFAALVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQ
AGWWDAALQESELQVAKRTKVSNPELAYLDIKGAWQLKPKELAILKPLATWRYHEAVNRD
LALNFVIKETDLLTISRLALRSPKRMEEEGVDPHAIRRHSSKIIAMVKTALETPADAYPP
EIVPIMEYPGYKQLFKRLKDEVKSVSNTSGLATEFLASKKQLNQLLSWVWKRDRDPARLP
DLMQGWRLPLLGEKLNTLVLK
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaacaactgcgagttatctgtgaattatcaaattattagccaagtaggcgatcta
caacgagtctgtcttgctgcccgtgatgcggatgtggtgatgctggataccgaatttgtc
cgtacccgcaccttctttccgcaactggggttgatccagatgtttgatggggaaaaccta
tcgctgattgatcccaccgtgctggatgaaatgacgccgtttgtcgagttattgcaagac
acttcggtattgaaagtgctgcacgcctgtggcgaagatttggaagtgttccagaatgcg
tttggctgcacgcctttccctatggtggatactcagattatggccgcgtttttgggctac
ggtttatccactgggtttgcggcgttagtgcaagaccaactgcaagttgagctagacaaa
agcgaatcgcgcaccgattggttagcgcgccctctaagtgacaagcaactggaatatgcc
gcggccgatgtgttctatctgctaccgatgtacgaaaaactggtcgagcaagtgacccaa
gccggctggtgggacgcggcattgcaagaaagtgaactgcaagtggccaagcgcactaaa
gtcagcaacccagagctcgcttacttagacatcaaaggggcttggcagcttaaacctaaa
gagctggcgatcctcaaacccctagcaacatggcgttaccatgaagcggtaaatcgagat
ttggcgctgaacttcgtgattaaagaaacggacttactgaccatttcgcgtttggcactt
cgtagtccgaaacgcatggaagaggagggggttgatccgcacgcaatccgtcgtcacagc
agcaaaattatcgctatggtgaaaacggcgctagaaacgccagccgatgcgtatccacca
gaaatcgtgccgatcatggaatacccaggttataagcagttgttcaaacgtttgaaagat
gaagtaaagagcgtttcgaacaccagtggccttgcgaccgaatttttggcgtcgaaaaaa
cagcttaaccaactgctgagttgggtatggaagcgcgaccgcgacccagcccgcttgcct
gatttaatgcaagggtggcgtttaccattacttggcgagaagctcaatacgctcgtcttg
aaataa
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