Vibrio cholerae O1 M66-2: VCM66_2519
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Entry
VCM66_2519 CDS
T00891
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vcm
Vibrio cholerae O1 M66-2
Pathway
vcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VCM66_2519 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcm03019
]
VCM66_2519 (vacB)
03016 Transfer RNA biogenesis [BR:
vcm03016
]
VCM66_2519 (vacB)
Enzymes [BR:
vcm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VCM66_2519 (vacB)
Messenger RNA biogenesis [BR:
vcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VCM66_2519 (vacB)
Transfer RNA biogenesis [BR:
vcm03016
]
Prokaryotic type
tRNA degradation factors
VCM66_2519 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
UPF0158
Motif
Other DBs
NCBI-ProteinID:
ACP06816
UniProt:
C3LRR1
LinkDB
All DBs
Position
I:complement(2703126..2705591)
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AA seq
821 aa
AA seq
DB search
MSDTTHLDPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHH
QMRTLIHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIH
HDILIPNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGW
RLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKM
YQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASL
VEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKE
LIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRN
QDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVA
NVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLA
VNLDDRQIDFELVETSRKLRGQGKTAKKRADEARAKAQGKKEAATKGACGKSPTKSELKP
QVEATRRPDSEGRSKPKKTKAPKKRKDQARKKSGKVRDKTK
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataccacacatcttgatcctttcgctgatcgcgaagccgacaattatgacaat
ccaattccgagtcgtgagtacattctcgaatttttaacccaagccaatgttcccatgaat
cgcaacgatctgttcgaagccctcaaactagaaggcgaagagcaatatgaagggttgcgt
cgtcgcctgcgggcaatggaacgagatggccaactggtgttcacgcgccgtcaatgctat
gccttgccagaaaaactggaaatggtgaaaggctatgtgattggccacaaagacggccac
ggctgggttcgtccagaaggaagcttaaacaaagaaggcgatattttattgccccaccac
cagatgcgtacgctgatccatggtgattttgtcttagtgcagccgagcggtactgataaa
cgaggccgtaaagaagggcgcttagtacgcattctcgaagagcgcaatggccaaattgtc
gggcgtttcttctttgaatacggttactcttatgtggtgccggatgactcacgcattcat
catgacattctgatccccaatgacttacgtgccggcgctcgcatgggcaacgtggtcgtg
attgaaattaccgaccgtggcacgcgtaaccgcggcatgatgggtaaagtcgttgaagtg
ttgggtgaaaacatggccccgggtatggaaacgcaaattgcgattcgtactcaccaaatt
ccccatgaatggcccgcagaagttgagcagcaagtagcgggattgaccgaggaagtacct
gaagaagccaagcaaggccgtgtcgatctacgtgctttgccattagtcacgatcgatggc
gaagatgctcgagatttcgatgatgctgtctattgtgaagcgaaaaaaggcggtggctgg
cgtttatgggtcgcgattgccgacgtgagctattacgtacgtcccgataccgctctcgat
aaagaagcgatcaaccgcggtaactcggtctatttcccatcgcaagttgtcccaatgttg
ccggaagtgctgtcgaacggcctctgttcactcaacccacaagtcgatcgcttgtgcatg
gtgtgtgaaatgaccgtatcggaaacgggtaagctctcgggctacaagcattacgaagcg
gtaatgaactcgcacgctcgcctgacttacaccaaagtgcatgaaatcctcgaaggggat
gaagaactgcgcgagcgttataaagcgctggttcctcatcttgaagagttgcacaaaatg
tatcaggtgctgaaaagtgcacgcgatgagcgtggcgcgattgagtttgaaaccgttgaa
accaaattcatcttcaacgctcagcgcaagattgaaagcattgagcctgttgtacgtaac
gatgcgcataagctgattgaagagtgtatgatcctcgccaacatcgcctctgcctctttg
gtagaaaaagccaaagaagcggcgttgtaccgtgtccatgagccaccaggtgaagaacgt
ctcactggcttccgtgatttcctcggtgagttggggctcgatctctccggtggccttgag
ccatcaccgaccgactacgccaatttaatgaagcaaattggtgaacgtccagataaagag
ctgatccaaaccatgttgctgcgctcgatgaagcaagcggtgtataacgcggataacgcg
ggtcactttggcttggcgttgaaacgttacgcacactttacatcgccaatccgtcgttac
ccggatttgttgctgcatcgtgcgatcaaatatctgatcgcgaagcaagaagggcgcaac
caagaccgttggactccaaccggtggctatcactactccttcgatgacatggacttctac
ggtgagcagtgctccatgactgagcgccgcgctgatgatgcgacgcgcgaagtgtctgac
tggctcaaatgcgagtatatgcaagatcatgtgggtgaagaattagaaggcgtcgtcgcg
aacgtcaccagtttcggcttctttgtccgtctcactgagctgcacattgacggcctggta
cacatttcgactctggctaacgactactaccactacgatccgattggtcagcgtctggtg
ggggaaagttttggtgccatctatcgtcttggtgatgcggtaaaagtaaaagtgttggcg
gtaaaccttgatgatcgccaaattgactttgaattggtcgaaactagtcgtaagctacgc
ggccaaggtaaaaccgccaagaaacgtgccgatgaagctcgagccaaagcgcaaggtaaa
aaagaagcggccactaaaggtgcctgtggcaaatcaccaacgaaatcagagttgaaacca
caggtagaagcgacgcgccgtccagacagtgaaggccgtagcaaaccgaaaaagaccaaa
gcgccgaaaaaacgcaaagaccaagctcgtaagaaaagcggcaaagtacgagataaaacc
aaatag
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