Volvox carteri f. nagariensis: VOLCADRAFT_103050
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Entry
VOLCADRAFT_103050 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VOLCADRAFT_103050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcn03041
]
VOLCADRAFT_103050
03009 Ribosome biogenesis [BR:
vcn03009
]
VOLCADRAFT_103050
Enzymes [BR:
vcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VOLCADRAFT_103050
Spliceosome [BR:
vcn03041
]
Complex A
U1 snRNP components
U1 related factors
VOLCADRAFT_103050
Complex B
VOLCADRAFT_103050
Ribosome biogenesis [BR:
vcn03009
]
Eukaryotic type
Pre-60S particles
Helicases
VOLCADRAFT_103050
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
9617458
NCBI-ProteinID:
XP_002946633
JGI:
103050
UniProt:
D8TJK8
LinkDB
All DBs
Position
Unknown
AA seq
803 aa
AA seq
DB search
MGASFWLLLLACLAACASLAIAQDPMCADRTMKGTCGLSSHVFVHWGEDGTSASSSEGGS
TPACCGSDDSECLSGGDKEGVIPHVPVTLPAPPWTRPLPRADYLHHLSQQQHSGALLDPN
QIATAVAVAAQPSHKTLLYPFSCTGVRLPLPQPCQPLSLHGGIRMYGKHAATYAETDEAA
AAAPDVPAGGVSLSSRPRHTAPLPHLGVAAGPGAVKAGELLTAEEYRQRHGVVVEDPEHP
GSVANIPEPFQAFRDAPFPPAVMDVLHSARYGEPSPIQAQAWPIALAGRDLVAIASTGSG
KTLGFLLPALLHIQASEAATGDGWEARGCDPALGPTAVVLAPTRELARQIEAEARRFSHV
VVSSGPQQQQQRPPPSSGRFGRQHRWGHRGEVEGGLRSACVYGGAARGGQLEELRRLPHL
LIATPGRLLDFIEAGDIRMKQVSYLVLDEADRMLDMGFEEQIAEVSRYMSADRQTLFFSA
TWPSDVRQAAAAFTKRRAVRLFIGDVQSKPVAAATITQRVQVVDGADKLDALEAYLREQF
AKGDEQSDGEESEAGGGGQGRGGEGRRVRRAIVFCETKAGCDHLTHNINNTMPFQAASLH
GDKSQAARDYALAKFKAGRVPVLVATDVAARGLDIPHVTCVVNYDMPQDIEMYVHRIGRT
GRAGAKGNSLALVNRSRDGGVARSLLEVLEGAGQEVPAELRRMADRSRAQGGYTGQRRGG
SWSRQGGRGGGWGGAGGGFGGRGRREGGSKFREGGREYRDREKESRDGDWDEEESHGSRR
HHADGWRSAGARPSRSSGEFSRW
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgagtttctggcttctgctgcttgcctgcctagcagcttgtgcaagcttggca
atcgcacaggacccgatgtgcgcggacaggaccatgaaagggacctgcgggctatcctcg
catgtttttgttcactggggggaggatggtacttcggcgagctcctctgagggcggcagc
actcctgcatgttgtggcagcgacgactcggagtgtctatcaggcggcgacaaggaagga
gtaataccgcacgttcccgtcaccctcccggcaccgccgtggacccggcccctgccacgt
gccgactatctgcaccatctgtcacagcagcagcactcaggcgctctgctcgacccgaat
caaatagcgacagcagtagcagtagcagcccaacccagccacaagacccttctgtacccc
ttctcatgcaccggcgtgcggctgccgctgccgcagccgtgccagccgctgtctctccat
gggggtatccggatgtacggcaagcacgctgccacttacgctgagacagacgaagcggcg
gcagcagcacctgacgtaccagcaggaggggtctccctttccagccgtccccgccacact
gccccgctgccgcacctgggcgtcgcggcggggccgggggcagtgaaggcgggggaactg
ctcactgcagaggagtatcggcagcgccacggcgttgtagtggaggacccggagcacccc
ggcagtgttgcaaacatccctgagcctttccaagcgtttcgtgacgcgccctttcccccc
gcagtcatggatgtgcttcattcggcccgttacggcgaacccagccccatccaggcccag
gcctggcccatcgccctggcgggtcgcgacctggtggccattgcctcaacaggctcgggc
aagacgttggggttcctgctgcccgcgctcctgcacatccaggcaagcgaggcagcaacg
ggagacgggtgggaggcacgcggttgcgaccccgcgctgggcccgactgctgtcgtactg
gcacccactcgcgaactggctcggcagatcgaggcggaggcccgtcgcttttcacatgtg
gtggtcagcagcggccctcagcagcagcagcagcggccgccgccgtcatcgggtcgcttc
ggccggcagcatcgatggggccaccggggcgaggtggaggggggtctgcgcagcgcgtgt
gtgtatggcggtgcggcacgtggggggcagctggaggagctcaggcggctccctcacctg
ctgattgccacgccgggtcggctcctggacttcattgaggcgggcgacatccgaatgaag
caggtgtcgtacctcgtattggacgaagccgaccggatgttggacatgggctttgaagag
cagatcgcggaagtgtcccggtacatgtcggcagatcggcagacgctgtttttctcggct
acctggcccagtgacgtgagacaggcggcggcggcctttactaaacgacgagcggtgcgg
ctctttatcggcgatgttcagtccaagccggtcgctgcagccaccatcacgcagcgtgta
caggtggtagatggggctgacaagctggatgcgctggaggcgtacttgcgagagcagttt
gcgaagggcgatgagcagtccgacggggaggaatcggaggccggtggaggtggccagggc
cggggcggcgagggccggcgggtgcggcgtgccattgtgttttgcgaaacgaaggccggc
tgcgaccacttgacgcacaacatcaacaacaccatgcccttccaagccgccagcttgcac
ggcgataagtcccaggctgcccgcgactacgcactggccaagttcaaggcgggtcgggta
cctgtgcttgtggccaccgacgtagcggcaagaggactggacatcccgcatgtgacatgc
gttgtcaactacgacatgccgcaggacattgagatgtacgtccacagaatcggccgtacg
gggcgtgcaggcgcgaaaggaaactcgctggcgctagtgaaccgttcccgcgacggaggc
gttgcgaggtcgttgttggaggtattggagggggcgggccaggaggtgcctgcggagctg
cggcggatggcggacaggtcgagggcgcagggcggctacacgggacagcggcggggcggc
agttggtcgcggcaaggaggcaggggtgggggttggggcggggccgggggtggtttcggt
gggcgggggcgccgggagggcgggtcgaaatttcgagaaggcggaagggaataccgagac
agggagaaggaatcgcgggacggggactgggacgaggaagagtcccacgggtctcggcgg
catcatgcagatggctggaggtcggctggtgctcgtccgagccgctcctcgggcgagttc
tcacgatggtga
DBGET
integrated database retrieval system
