KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_103253
Entry
VOLCADRAFT_103253 CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03420  Nucleotide excision repair
vcn03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    VOLCADRAFT_103253
   03460 Fanconi anemia pathway
    VOLCADRAFT_103253
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vcn03032]
    VOLCADRAFT_103253
   03400 DNA repair and recombination proteins [BR:vcn03400]
    VOLCADRAFT_103253
DNA replication proteins [BR:vcn03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    VOLCADRAFT_103253
DNA repair and recombination proteins [BR:vcn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     VOLCADRAFT_103253
SSDB
Motif
Pfam: ERCC4
Other DBs
NCBI-GeneID: 9618056
NCBI-ProteinID: XP_002947024
JGI: 103253
UniProt: D8TKI2
LinkDB
Position
Unknown
AA seq 1450 aa
MEQVEATALSSLMLLPYERHLIEEAIQHARVAGAPHLNPSSDPKDHPAQQQQQQQQPGTT
PFPATSLSLSVTPANAAPSTSKRTDATPLPLSAHTSIHCGSGSGIDGDGHPGCVLVLGAG
PRQRALITAELARHDPSLEAPVDITNEIPAAERVQLYRALPGGRPLFITPRILVVDLLAR
RLRPWEVGGLLILNAHRASDTSGEGFAVALLKAEGDAAARTGPARGGSGGGCWVYALSDA
PGAFNRGFNRVEHVMKALRLKRLHLWPRFQEHVRQCLDNHKPVVFEWDQELSGPMVLIQA
ALVEVLEGLIRELRRTNNKLDMTELVLENGVLRAFDEIVRRQLDPIWHTVSYKTRRICTD
LRTLRELSALLLSADCVTFLAHLEGLRQSEGVRCMWLFHDATHAIYEQARRRVYIYRQQQ
QQQQGHQSASGSRPGTGTRAARATSGGVAAGGSSASAGAGAGAGGGGSGCHSEVEAILEE
PPKWGLLGEVLGEVQRQRRQLRALAGVEDLSTLARTLTRELRAGAQEHKSTPQPPRTDNT
GTARPAPAPAPAAAGGTGSGFRAATGTQKPRISPSSGPRQGQGSESGAVATRGSGGPQTA
AAVTVATEAEASPDPELQVEVVDLAASSDASEDGDQDQDEHDDLGDEQGEQGHRAGRRAT
ATAAAPAVADRRPQPPPVVGGSGAGGCGGTPTAQSLRALLEDLGLLGGGEGGGGGGMTSA
GGRGSGPAEQRSDAAGGSGVSGSGVVEVTAGDLRVLAEAGRGPVLVVVRELHSTRLLERV
VREGGRPVMQQLYESYLLSKLKPTERGRRGSDAAAGGGDGGAAAPGGSRGSGRGRGGGGG
WKRYRGGGDGDECSHGPVLRPGEHQALLAEAHRVGVARGEPAAQVRGRGPGRAAKRARLA
GGDGGGTGTSAATVPAADASGRQSRGPRGRRGGSSGGSRRQRKPDDSPVRVAAAAAADSE
QEEQLEMEVAVLEGEKDEGGAAAGSNVGDRASDDDWSDFQGDEGVYGKPPQSRAAAASYR
GRGTAGQGRRNGGSSRAIGRQGRGRSTAAATAAEAGESVTGDKVTARGKVAATAAAIAAA
PQPSTAPSATAVAATAGCSDDGAVAGGGHGMSSPAATASDTASQALLQDVHFVSLDGHDE
FVLWRLRPSFIIMYEPDLAFLRQRGGGSSNGARGGGGGALSADLWLDVYSANALTRSAGG
RMAGQGGGGVGGLGASGGGAGRRLVVDVREFMSSLPAVLYQKGFELLPLTLEVGDYVLSP
QLVVERKSLPDLHASLASGRLYNQVAAMCRHYPRPLLLIEFDADRQFGLQSPSELGDDID
PRNVISKLTLLTLHFPKLRLLWSRSPHATADLFAVLKSNQDEPDPAAAALVGVPLGPDGV
PLPPSDAEGGGGGGGAGGLRADSNYRAILGHVSSLAELAALPLERLEVIMASSKNARALR
DFLDAPCPRI
NT seq 4353 nt   +upstreamnt  +downstreamnt
atggagcaagttgaggcaaccgcgttgtcgtcgctaatgctcctgccctacgagaggcat
ctcatagaagaggccattcaacatgcacgcgttgctggcgcaccacacctaaacccatcc
agcgacccaaaagaccatcctgcgcaacaacagcaacaacaacaacaacctggcaccacg
ccctttcccgccacatcgctatccctttccgtaacgcctgccaatgctgccccctcaacc
agcaaacgcaccgacgcaacacccctacccttgagcgctcatacaagtatccattgcggc
agcggcagcggcatcgacggcgatggacaccccggctgcgtcctcgtccttggcgccggg
ccccggcagcgagccctcattactgctgagctcgcccgccacgacccctccctggaggcc
cccgtggacatcaccaatgaaattcctgctgcagagcgtgtacagctgtacagggccctc
cctggaggtcgacccctcttcatcaccccccgaattctggtggtggacctgctggctcgc
agactgaggccgtgggaggttgggggactgctcatactcaacgctcaccgcgcaagtgac
accagtggcgagggctttgcagtggcgctgctcaaagctgagggggacgcagccgcgcgg
acggggccggccaggggtggcagcggaggagggtgttgggtttatgccctgtctgatgca
cctggtgcgttcaaccgtggattcaatcgcgtggagcatgtgatgaaggcgctgaggctg
aaacggctgcatctgtggcctaggttccaggagcatgtacggcagtgcttggacaatcac
aagcccgtggtgtttgagtgggaccaggagctcagcggccccatggtgctcatccaggcc
gccctggtggaggtgctggagggcctcatccgggagctgaggaggaccaacaacaaactg
gacatgactgagctggtgctggagaacggtgtgttgcgcgccttcgacgaaatcgtacgt
cgacagttggaccccatctggcacaccgtcagctacaagacccggagaatatgcaccgac
ctgcgcaccctgcgggagttatccgccctgctgctgtccgccgactgcgtgaccttcctg
gcgcacctggagggactcaggcagagcgagggggtgcgctgcatgtggctgttccatgat
gcaacacacgccatttacgagcaggcccgccgccgtgtctacatctaccgccagcagcag
cagcagcagcaaggtcatcagagcgcctccggatccagacccggaaccggcacccgggcg
gctagggccacctcaggaggtgtggcggcgggggggagcagcgcctcagccggtgccggt
gccggtgccggtggcggtggcagcgggtgtcactccgaggtggaggctatcctggaggag
ccgcccaagtgggggttgctgggggaggtgctgggggaggtgcagaggcagcgccggcag
ctgagggccctagcgggtgtggaggacctgtccacactggctcggacactgacccgggag
ctgcgggcgggcgcacaggaacacaaatcaacaccacaaccaccccgcaccgacaacacg
ggcacagcccggccagcaccggcaccggcaccggcagcggcagggggaactgggtcaggg
ttcagggcggctaccgggactcagaagccgcgaatctcgccgtcgtccggtcctcgccaa
ggtcagggttctgagtcgggagcagtcgcgacccgtgggtcaggtgggccgcagacggca
gcggcggtaacggttgcaacggaagctgaagcctcacccgacccggagcttcaggttgag
gtggtggacctggcggcttccagtgatgcgagcgaggatggggaccaggaccaggacgag
catgatgacctgggggacgagcagggggagcagggacacagggccggaaggagggctaca
gccacggcagcagcgcccgctgtagcagaccgccggcctcaaccacctcccgttgttggt
ggttccggagctgggggctgtggaggtacccccaccgcccagtccctacgtgcgttgctc
gaggatctgggtctgctggggggcggggaagggggaggaggaggagggatgacatcagcg
ggcggcagaggcagcggcccggcggaacagcggtccgatgcggcgggcggcagcggggtc
agtggcagtggggttgtggaggtgaccgctggcgacctgcgtgtgctcgcggaggcgggt
cgggggcccgtgctggtggtggtcagggagctgcactcgaccaggttgctggagagggtg
gtgcgggaaggcggccgtccagtcatgcagcagttgtacgagtcgtaccttctaagcaag
ttgaagccgacggaaagaggacgtcgcggcagcgatgcagctgccgggggcggggacggc
ggtgcagccgcacctggcggcagccgcggctccgggcgcggccgtggtggcggcggcggc
tggaagcggtaccgtggcggcggtgatggtgacgagtgcagtcacggcccggtgttgcgg
ccgggggagcatcaggcccttttggcagaggcccaccgtgtgggggtggcgcggggggag
ccggcggcgcaggtccgggggcgggggccgggtcgggcagcaaagagggccaggctcgcg
gggggagatggcggcggcaccggcaccagcgccgcaacggtcccagcagcggatgcgtcc
gggcgtcagagccgggggcccaggggccggcggggtggcagtagcggtggcagcaggcgg
cagcgcaagccggatgattcaccggtgcgggtggcagcagcggcagcagcagattccgaa
caggaggagcagctggagatggaggtggcggtgctggaaggggagaaggatgagggggga
gctgcagcaggcagcaatgtgggggatagagcgagtgatgacgactggtcggactttcaa
ggtgatgagggggtgtacggcaagccgccacagagtcgtgcggcggcggcgtcttatcga
ggtcggggtacggcagggcaggggcgccgaaacggcggcagcagcagggcaataggccgc
cagggccgtggacgcagtacagctgctgctactgcggcggaggctggggaaagtgtcact
ggtgacaaggtcaccgcccgagggaaggtggctgctactgctgctgctattgcggcggcg
ccgcagccgtcaacagccccttcggccacggctgtagctgctacagcgggatgtagtgat
gatggcgctgtagcaggtggtggccatggaatgtcctctcctgcagctactgctagtgat
actgcttcacaggcattgctccaggatgttcactttgtaagtttggacggccatgacgag
ttcgtgctgtggcggctgcgcccctccttcatcatcatgtacgaaccagacctggccttc
ctgcggcagcgagggggagggagcagcaacggagctcgcgggggtgggggtggcgctctg
agcgcagacctgtggctggacgtgtacagcgccaatgcactcacccggtctgcggggggc
cgcatggcgggacaggggggcggcggtgtgggtggtctcggagcgagcgggggaggggcg
gggaggcgcctggtggtggacgtccgggagttcatgagcagcctgccagcggtgctgtac
cagaagggctttgagctgcttcccttgactctggaggtgggggactacgtgttgagtccg
cagctggtggtggagcggaagagcctgcccgacctgcacgccagcctggccagtggcagg
ttgtacaaccaggtggcggcgatgtgccgccactatccccggcccctgctgctcattgag
ttcgatgcggaccggcagttcgggttgcagagcccctccgagctgggggacgacatcgac
ccgcgcaacgtcatctccaagctcaccctgctcaccctgcacttccccaagctcaggctg
ttgtggtctcggagcccacacgccaccgccgacctgttcgcggtcctcaagtccaaccag
gacgagcccgaccccgccgcggcggcgctggtgggggtccccctggggccggacggggtg
ccgctgccgccatcggatgcggagggcggtggtggaggaggaggtgctggggggttgcgg
gcagattccaactatcgtgccattctgggccatgtctccagcctggcggagctggcggcc
ctgcccctggagcgactggaagtcatcatggccagctctaagaacgcccgcgcgttgagg
gacttcctagacgcgccatgtccccggatctga

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