Volvox carteri f. nagariensis: VOLCADRAFT_103576
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Entry
VOLCADRAFT_103576 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
VOLCADRAFT_103576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcn03021
]
VOLCADRAFT_103576
03019 Messenger RNA biogenesis [BR:
vcn03019
]
VOLCADRAFT_103576
Transcription machinery [BR:
vcn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
VOLCADRAFT_103576
Messenger RNA biogenesis [BR:
vcn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
VOLCADRAFT_103576
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_4
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
9620832
NCBI-ProteinID:
XP_002947795
JGI:
103576
UniProt:
D8TMX7
LinkDB
All DBs
Position
Unknown
AA seq
652 aa
AA seq
DB search
MQLIFNRSTVTKPAATSLGSGDPYGENAGVTQGIRALPPCIKPLGKHLKNALNWQFKGGV
RRHLRMAALADSSLLFAAKRVSMVYIQSPCMMCSCPLYCLILPGLSVAAWLCPWKFAAGY
ASKNSRLGMQIEPPDLPAEAIGQQPANYRKNFRKTVCTYWLRGLCMKGDACGFLHQFVSD
RMPVCRNLLKYGECHDQDCPYKHSLDEIKECNMYKLGFCIYGPVCRYKHIKNPGPPPDPE
EVEAAKPREYRNINVVVNQVNPGVARDDERPLKRARPPLTGWERDRVGDRDRDRPLALPA
PPPPSSQAAAGGGGPGGRHGMEGGPPFSGRGGRGGMGDRGGGRGGGRGRGGGGWHGGADD
LDGGGGGGGGMHPGGRDQTTVGMPPVTAPNPGALPPMAGLIAPVMPGIMPGGVPGQGMAG
PGGGGGGGGGGGGPPPPMGPPPGPGGGGGAMGHFDGGLFAAMAGQEEANKSQILRDDDDL
GGFRGVSGHPPLFLSGEGQANTSTIKTNPDDGYEMCTGGGFECFIILRNFNLRWGWGKEV
FIQDVRATSGGVGPHSGGHLGHMARPPAVPSSAEARFIQPVVTWRDAFTGSRMCPALTST
RKLTPGQHSERNGKTGCRQEVLLRSKAPDARLCVALRDIQCGRMVSVPTRLR
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgcaactcatcttcaaccgctccacagtcacaaagcctgcagcgacaagccttggctcc
ggtgatccctatggggaaaacgcgggggtcacccaaggtattcgggcactcccaccgtgc
atcaagccgcttggcaaacaccttaagaatgctctcaactggcaatttaagggtggcgta
agacgccaccttcgcatggcggcgttggcggattcgtcgttgctttttgcagctaaaagg
gtttcaatggtttatattcagtcgccatgcatgatgtgcagctgtcctttgtactgcctc
atactgccggggcttagcgttgctgcttggttgtgtccttggaagttcgcggctggatac
gcgagtaagaattcgcggctgggtatgcagatcgagcctccggacctaccagccgaggcg
atcggccagcagcctgccaactacaggaagaacttccgcaagacagtatgtacgtactgg
ctgagaggtctctgcatgaagggcgacgcgtgcggcttcctgcaccagttcgtgtcggac
cgcatgcccgtatgccgcaacctcctcaagtacggcgaatgtcacgaccaggattgtccg
tacaagcactccttggatgagattaaggaatgcaacatgtataaacttgggttttgcatc
tacgggccagtgtgccggtacaagcacatcaagaaccccggtccgcctcccgacccggag
gaggtggaggctgccaaaccccgggagtaccgcaacatcaacgtggtggtcaaccaggtt
aatccaggagttgcacgtgatgatgagcggcccctcaagcgagccaggcccccactaacg
ggttgggagagggaccgagtgggtgacagagaccgagaccggcctctggcgctgccggca
ccgccgccgccgtcgtcacaagcggcagcaggaggcggcgggccgggaggtcgccacggc
atggaggggggcccgcctttcagtggccgcgggggccgcggcggcatgggcgaccgcggg
ggcggccgtggcggcggtcgcgggcgtgggggcggcgggtggcacggcggtgccgacgat
cttgatggcggcggtggcggcggcggcggaatgcatcccggcggccgcgaccagacgacc
gtcggcatgcccccggtcacagctcccaaccccggcgccttgccgccgatggcaggactg
atcgcgcctgtcatgccgggcatcatgcccggaggggtgccggggcaggggatggcaggg
ccaggcggcggtggtggcggtggcggtggtggcggcgggcctccgccacctatggggccg
ccgcccggacctggtggcggcggcggtgccatgggtcattttgacggggggctctttgca
gccatggcgggacaggaagaggcaaacaagagccaaatcctgcgggatgatgatgacctg
gggggtttcaggggggtttcagggcaccctccgcttttcctgtcaggtgaaggtcaggcg
aacacctccaccatcaagacgaacccagacgacggatatgagatgtgcacggggggaggg
ttcgaatgtttcataatcttacggaacttcaaccttaggtggggttggggtaaggaggtt
ttcattcaggacgttagggcaacaagcggaggagtcggtccccactccggcggacacctg
gggcacatggcgcggccgcccgcggtcccctccagcgccgaggcccggttcattcaaccc
gttgtgacctggcgggatgcttttaccgggtcccgaatgtgtccagctctgacaagcact
aggaaattgaccccgggtcaacattcggagcggaacggcaagacaggctgtcgccaggag
gttttattacggagcaaggcacctgatgcgcgactgtgcgtggctctccgtgacattcaa
tgtggacgaatggtttccgttcccaccaggctccgttag
DBGET
integrated database retrieval system
