Volvox carteri f. nagariensis: VOLCADRAFT_103611
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Entry
VOLCADRAFT_103611 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K14768
U3 small nucleolar RNA-associated protein 7
Organism
vcn
Volvox carteri f. nagariensis
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vcn03009
]
VOLCADRAFT_103611
Ribosome biogenesis [BR:
vcn03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
VOLCADRAFT_103611
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BING4CT
LRR_8
LRR_1
WD40_Prp19
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
LRR_4
Beta-prop_EML_2
WD40_WDHD1_1st
LRRNT_2
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_Gbeta
Beta-prop_Vps41
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
PRA1
Beta-prop_Aladin
Beta-prop_CAF1B_HIR1
Motif
Other DBs
NCBI-GeneID:
9620870
NCBI-ProteinID:
XP_002947977
JGI:
103611
UniProt:
D8TNC3
LinkDB
All DBs
Position
Unknown
AA seq
1810 aa
AA seq
DB search
MAEGEAPHQGGEGKTSKKRKKVRDPDAADAAKRLKRGPSVDLKSITDKKLKGKLRRAEAV
FASSQKKAAQINEWLLPASAGTLEAEGIERTWNFKQEAIVQAVDVTAARKAFDLSLPELG
PYRLNFTRNGRFMVLGGNLGHLAVMDWQRSHLVCEVQVRETVRDVVFLHNETFFAAAQKK
YVYVYDKRGLEVHCLRDHTEVNALDFLPNHFLLTSIGEHGVLRYQDTSTGHIVAQHKTRL
GPCSLMRHNPHNGIMLLGHLRGCVTMWTPNLTTAAVKMLCHRGPVKALAVDPSGTYIATS
GVDSQIKVWDIRMLQPMHAYYSHAPVTQMDISQRGLLAVGYGRKVQIWQDALRSKAQSPY
LTHHLPEGVLETFRFCPYEDVLGIGHSAGISTILVPGAGEPNFDSFVANPFQTVKQRREQ
EVVALLDKLQPDTIVLDPDTIGRVRKEPADVMKERREEEAAANTARLVAMRRKSEVKAKM
KGKNKPSRRHRKKQSNIIEDRKPSIQERQKEEAVRRKEAAQKKSQAAIPEDAPRARSVQQ
LPQGPSPARVERSRGLGGAASTVIHCRASLPHLCDPLFPIVGYLKYLDGNSLTGPLPGMW
AALRSLRELRLRNNNLSGGCLPASWGGGLASLQYVDISLNPQLCASDAGPSNGGPPASWG
RLGFLRSMALQNTGLAGTLPPEWAFMRRLVQMDLSENNIAGTLPEEWAAASDVSAGIGFF
GNGDGSTTITNGGISSSGGLDQLRFMDLSRNSLQGPLPPAWSRLQSLQHLSLHTNALSGT
VPEAWGSLHGLAGLRLHSNAALCGPLPHVMLGGPIASSAVGGGGSGDGGGVGGDGGGVVG
EATTALAAAINGTALLRECVWARTAGLLQDIRRSLTDPRGALATWVEGTDPCGAVASRRW
AGVVCDVNAGAAVADSVDGRVGGGLGVVGLALQDMGLRGSLPPQLALLGNSLRQLSLDGN
SLSGTLPGTWALLGGLTKLTAARNTISGSLPAAWSALHNLSYLDLSYNTLRGSLPGSWGE
GMTSIRHIHLDGNALNGSLPASWAGGSDGSSTGSNNNNSMAALRYLTADGNSLSGGLPAA
WSLLGQLREVSLKDNLLEGPVPPSWLEDLGFLRYLGLSFNRGLCGRVPFLLDPGEGKAGG
GDSRTTTTASNTSSTSVTPSASSAPPPSGTPAIPTANAAAAAATADDADESPGFRLEADS
TQLGAPCPDTGGGKGPVAASVLLWATAGASSVGTLVLVGLLTAAAHAANRFRNQRNKDAG
SAKAAAALAAPAQSSSPRAPPPSPRLLNITGGPLSLSFLQGYSPSRLPSSTSPAHRATTS
PSRTAAAATTRNGPPDGTHVFGRTAANGDLPSAASPAPQAAAHRSPRSPAAPPSSLPRLE
VHGLQLRIPGRHEGCGTGGAEAVSPPSPSASTSASPHLACFSGAGVSSPRRPASERDGGS
SCGATPAGRLPSALSSPSGSARRNHPVCLVTRAMGSLLGHRPSGGGTGPQTSSPRGHLPR
GELSEEDTAAAAEIYQGLLMSGETVATASEQQLWGYELGEQWGAGSAADELEQERSGRPR
SPQAGSFPASSFQATQQSLQYSQATDLRVIGRAATPHSPTSPSASRPAARPAAAVRGSPA
RPPPNAASPPPLPAHDLRQQEHRSLGLRASPDLNLNNNAATDKLDGKLSRQLSSEPEPDS
SCTFPAVPLQASVEVAVTVCATGSSPRLLAPMQGQDEDSLVATAPQLLPQSKPVLLPQQQ
YEHPPLQAALTFMVREVVNLDEYDGGSAGNGEKVAVLENEGEEEEEEEKAQNQESMKNAA
VRGVPKLDRP
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atggcggagggcgaggccccacaccaaggtggagaggggaaaacaagcaaaaaacgaaaa
aaggtccgcgacccagatgccgctgacgctgccaaacggctgaaacgcggcccatccgtg
gacctgaagtccattaccgacaaaaagctcaaagggaagcttcgcagggcggaggcggtg
ttcgccagctcgcagaaaaaggcggcgcagatcaacgaatggctgctgccggcgtcggcg
gggacgttggaagcggagggcattgagcgtacatggaacttcaagcaggaggctatcgtg
caggcggtggacgtcacggcggcgcgcaaggcctttgacctgtctctgccggaactaggc
ccctaccgactgaacttcacgcgcaacggccgcttcatggtgctgggcggcaacctgggt
cacttggctgtcatggactggcagcgatcgcacctcgtgtgcgaggtccaggtccgggag
acggtccgtgatgttgtgtttctgcacaacgagaccttttttgcggcggcacagaaaaag
tacgtgtacgtgtacgacaagcggggcctggaggtgcactgcctccgagaccacacggaa
gtgaacgcgctggacttcctgccaaaccacttcttgttgacgtccataggagagcacggt
gtgctacggtaccaggacaccagcacgggccacatcgtagcacaacacaagactcggctg
gggccgtgcagcctgatgcgccacaacccgcacaacgggatcatgctgctgggccatctc
cgcggctgtgtgaccatgtggacccccaacctcaccaccgcggccgtcaagatgctgtgc
caccggggcccggtgaaggcgctggctgtggaccccagcgggacttacatcgccacctcg
ggggtggactcccagatcaaggtgtgggacatccgcatgctgcagccaatgcacgcctac
tacagccatgcccccgtgacccagatggacatcagtcagcgcggattgctggcggtgggg
tatggccgcaaagtgcagatttggcaagacgcgctgcgcagcaaggcccaatcaccttac
ctgacccaccacctgccggagggtgtgctggagacgttccggttctgcccttacgaggat
gtgctggggatagggcattcggctggcatcagcacgatactggtgccgggtgctggtgag
cccaatttcgactccttcgtagccaaccccttccagaccgtcaagcagcggcgggagcag
gaggtggttgcactgctggacaagctgcagccggataccattgtgctagacccggacaca
attggcagggtccgcaaagagcccgccgacgtgatgaaggagcgccgggaagaggaagct
gccgcgaacacggctcgtctggtggcgatgcggcgcaagtcggaggtcaaggccaagatg
aagggcaagaataagcccagtcggcggcatcgcaagaagcagagcaatatcattgaggac
cgcaaaccctccattcaggagcgacagaaggaggaggcggttcgtcggaaggaggcggcc
cagaagaagtcacaggctgccattccagaagacgctccccgagcccgttctgtccaacaa
ctccctcaagggccatctcccgctcgcgtggagcgctctcgaggacttggaggtgctgcg
tccactgtcatccactgccgcgcctccctgccgcatctttgcgaccccctcttccccatt
gttggctaccttaagtacctggacggcaactcgctcactgggccgctgccgggcatgtgg
gcggccctacgaagccttcgagagcttcgccttcggaacaacaatttgtcaggcggctgc
ttaccagcttcgtggggtggaggactggcctccctgcaatacgtggacatcagcctgaac
ccacagctctgcgccagcgacgcaggtccgtccaacggcggccctcccgcatcgtggggt
cgtctagggttcctgcgctccatggcgcttcaaaacacaggtctcgcgggcacgctgccg
ccggaatgggctttcatgcgacggctcgtccaaatggacttgtcagagaacaacattgcg
ggcacgctaccggaagagtgggccgcggcctcggacgtaagcgccggcatcggattcttc
ggtaacggcgatggcagcaccaccatcaccaacggcggcatcagtagcagcggagggctg
gatcagctccgtttcatggacctgagccgcaactccctacaggggccactgccgcccgcc
tggtcacgtctgcaatccctgcaacacttgagccttcacaccaatgcgctatcggggaca
gtgcccgaggcctggggctcactacacgggctcgctggcttgcggctccattccaatgcg
gccctgtgtggtccgctgcctcacgtcatgctggggggccccatagcttcgtcggctgtt
gggggcggcggcagcggtgatggtggtggtgttggtggtgacggtggtggcgtggtgggc
gaagctaccacggctttagcggcagccatcaacggcactgccctgctacgggaatgcgtc
tgggctcggacagctggcctgctgcaagacatccgccgctcgcttactgacccacggggc
gccctggccacctgggttgagggcactgacccttgcggagccgtcgccagccgccgctgg
gcaggtgtggtctgcgacgtgaacgcgggcgcggcagtcgccgacagcgttgacggtcgt
gttggaggtggccttggcgtggtcggcctggctctacaggacatgggcctgaggggctcc
cttccgccccagttggcgctactaggaaacagtctgagacagctgagcttggatgggaac
agcttgtcaggcaccttgcccggcacctgggcgctgctagggggcctcactaaactaacc
gcagcgaggaacaccataagcggctccctgcctgctgcctggagtgcgctgcacaatctg
tcgtacctggacttgtcgtacaacacccttcggggatccctgccaggctcttggggcgag
ggcatgacaagcatccgccacatccatctggacggaaatgcactcaacggatcactgccg
gcatcttgggccggcggcagcgatggcagtagcaccggcagtaacaacaacaatagcatg
gcggcgcttcgctacctgacggcagacggtaacagcctgagtggcggcctgccggcggcg
tggagcctgttggggcagttgcgggaggtcagtctcaaggataacctgctggaggggccg
gtgccgccaagctggttggaagacctcgggtttcttaggtacctgggtctcagcttcaac
aggggcttgtgtggacgtgtccctttcctcctcgaccctggcgagggcaaggccggtggc
ggggattccaggaccactaccacagcgtccaacaccagttcaacctccgtaacgccatca
gcctcatccgctcctcccccatccggcacacccgccattcccactgcgaacgctgctgct
gctgctgctactgctgacgatgcggatgaatctcccggatttcgtctggaggcggattct
acgcagctgggagctccctgccccgacaccggcggcgggaagggccccgtggccgccagc
gtgctgctgtgggccacagctggtgctagctcggtcgggaccttggtgctggtgggcctg
ctaaccgctgccgcacacgcggccaaccgcttccgcaaccagaggaacaaggacgcgggg
tcggcgaaggcggcggcggctctggccgcgcctgcgcagtcgtcctcaccgagggcccca
cctccgagcccccgcctgctgaatatcaccgggggacccctgagtctgtcgttcctccag
ggctactccccaagccgcctgccgtccagcaccagtccggcacaccgtgcgaccacatcc
ccctcccgaactgcagccgctgccaccacccgtaatgggcctccggacggaactcacgtc
ttcggacggacggcagccaatggggacttgccttcggcagcgtcgccggcgccccaggcg
gctgcccacagatcgccacgcagtcccgcagcaccgccgtcatcgttgccgagactggaa
gtgcacgggctgcagctgcgcattcccgggcgccatgaaggatgcggaactggcggcgcg
gaggctgtgtcgccgccgtcgccgtcggcgtcaacgtctgcgtcgccgcacctggcctgt
ttcagcggcgctggcgtgtctagcccgcgccggcctgcttcggagcgagacggcggcagc
agctgcggcgcgactcccgctggccgcctgcccagcgccctcagctcaccttccggttcc
gcgcgtcgcaaccaccctgtttgccttgtcaccagggcaatgggctcgcttctgggtcat
cgccccagtggcggcggcaccggtccgcagacctcctcgccccggggacatctcccccgg
ggagagttatccgaagaggatactgcagcagcagcggagatctaccagggactgctcatg
tccggcgagacggtggcgacggcttcggagcagcaactgtggggctacgagctgggggag
cagtggggtgccggatccgccgctgatgagctggagcaggagcgctccggcaggccccgg
tcgcctcaggcggggtcatttccggccagttccttccaagctacccaacagtccctgcag
tactctcaggcaaccgaccttcgggtcatcggcagggccgctacaccgcattcgcccacc
tcgccctccgccagccggcccgcggctcgccccgccgccgcggtgcgcggctcaccagcc
cgcccaccgcccaatgccgcgtcgccgccgccgcttcctgcgcatgacctccgccagcaa
gaacaccgcagcctgggtctgcgcgcctcacctgatctaaacctcaacaataatgccgcc
accgacaagctcgacggcaagctctcgcgccaactgagcagtgaacccgaacccgactcg
tcatgcaccttcccggcagtaccgctgcaagcgtcggtggaagtggccgttacggtgtgc
gccaccggtagctcgccccgtttgctagcgcccatgcagggccaggacgaagactccctg
gtggcgacggcgccgcagctgttgccgcaatcaaagccggtactgctgccacagcagcaa
tacgagcacccgccgctgcaggcggccctgaccttcatggtacgggaggtggtgaacttg
gacgagtacgatggtggcagtgctggcaatggcgaaaaggttgcggtattggaaaatgag
ggtgaggaggaggaggaggaggagaaggcgcaaaaccaggagagcatgaagaacgctgcg
gttcgaggggttccgaagctagatcggccatga
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integrated database retrieval system