KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_105399
Entry
VOLCADRAFT_105399 CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K07466  replication factor A1
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03030  DNA replication
vcn03420  Nucleotide excision repair
vcn03430  Mismatch repair
vcn03440  Homologous recombination
vcn03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VOLCADRAFT_105399
   03420 Nucleotide excision repair
    VOLCADRAFT_105399
   03430 Mismatch repair
    VOLCADRAFT_105399
   03440 Homologous recombination
    VOLCADRAFT_105399
   03460 Fanconi anemia pathway
    VOLCADRAFT_105399
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:vcn03000]
    VOLCADRAFT_105399
   03032 DNA replication proteins [BR:vcn03032]
    VOLCADRAFT_105399
   03400 DNA repair and recombination proteins [BR:vcn03400]
    VOLCADRAFT_105399
Transcription factors [BR:vcn03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    VOLCADRAFT_105399
DNA replication proteins [BR:vcn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    VOLCADRAFT_105399
DNA repair and recombination proteins [BR:vcn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     VOLCADRAFT_105399
   MMR (mismatch excision repair)
     VOLCADRAFT_105399
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     VOLCADRAFT_105399
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 DUF223 tRNA_anti-codon MtrC-MtrF_N
Other DBs
NCBI-GeneID: 9628430
NCBI-ProteinID: XP_002952179
JGI: 105399
UniProt: D8U0K1
LinkDB
Position
Unknown
AA seq 499 aa
MSVNSVITSQTPVPSSRTPVSFTPTATPPMSMSSLKNALTPPSTSLSDRKNYHKIAQLHP
YDSNWCIKAKVELKAPLRSMSIRGSDVKILTVDLVDDTGQMIQGTFWRAPAERFSESLME
GKVYVFHRFKVKPADKKYSSVKADYQIDFTERTEVTEAADQDTSSMTAAVEITPIEVLPR
RVGGRMPVDVMGVVLALGPLGTVKRKADSSELPRRDITLGDMSCKSVVLTLWGDNASAFA
GQLEGQEGKVVMQVTHVRVTDFNGCSVSSLTKSVVSLNPEGSGAAQLLTWYSTAGMVPDR
FTPVGQDLPGTRAVSNGSGAVPSRERFFTVKDVAGISADSLQDDKATFQAVTAYIAMVNS
ELQMYYLANPENGRKVVDQGGGRWAEADGRVVERPEHRYVLSVKLADHTGEAVVQLFNKE
AEAVMGIKADELAALKEAGEGFEAALRAAQWRPWSVVVMSKAREYNGERRVRHTAHRVDT
LDWVSEGQRLAMLIGKYGN
NT seq 1500 nt   +upstreamnt  +downstreamnt
atgtctgttaacagtgtaataacgagccagacgccggtgccctccagtcgcacgccggtg
tccttcacccccactgccaccccgcccatgtctatgtcttctctcaagaatgccctgaca
ccgcccagcacgagcctcagcgatcgcaagaactaccacaagattgctcagcttcatccg
tacgacagcaactggtgcatcaaagctaaggtcgagcttaaggcccctcttcgcagcatg
tccatacgcggatctgatgtcaagatcctcactgtagatctcgtggacgacacgggccaa
atgattcaaggtaccttttggagggcccccgcggagcgcttttcagaatcgctcatggag
gggaaggtgtacgtgttccatcgcttcaaggtgaagcctgcggacaagaagtacagcagc
gtgaaggcagactaccagattgactttacagaacgtacggaagtgactgaggctgccgac
caggacacctcatccatgacggcggctgtggagatcactcccattgaggtgctgcctcgt
cgggtgggtggccgtatgccggtggacgtgatgggggtggtgctggcgctggggcccctg
gggactgtgaagcggaaggcggatagcagcgagctgccgcggcgggatatcacgctggga
gatatgagctgcaagagtgtggtgttgacgctgtggggggacaacgctagtgccttcgcg
ggccagctggaggggcaggagggcaaggtggttatgcaggtgacccacgttcgcgtaact
gacttcaacggctgctccgtgtcttctctgaccaagagcgtcgtcagccttaatccggag
gggtccggagctgcgcaactgctcacgtggtattccacagcgggcatggttccggatcgc
tttacccccgttggacaagacctgccggggacacgggctgtcagcaatggcagcggggcc
gtaccctcccgggagcgattcttcaccgtgaaggacgtggcgggaatcagtgcggactcg
cttcaggatgacaaggccactttccaggccgtgactgcctacatcgcaatggtgaacagc
gaactgcagatgtactacctggctaatccagagaatggccgcaaggttgttgatcagggc
ggtggtcgctgggcggaggcggatggtcgtgtggttgagcgccccgagcaccgctacgtt
ctgagtgtcaagctggcggaccataccggggaggctgtggtgcagctgttcaataaggag
gctgaggcggtgatgggcattaaggcggacgagctggcagccctcaaggaggcgggagag
ggcttcgaggcggcgctccgggcggcccagtggcgaccctggtcggtagtcgtgatgagc
aaggcacgggagtacaacggcgagcggcgtgtacggcatacagcacatcgtgttgacacg
ttggattgggtgtcagaggggcagcggctggcgatgcttattgggaagtacggcaattag

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