KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_106291
Entry
VOLCADRAFT_106291 CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03020  RNA polymerase
vcn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VOLCADRAFT_106291
  09124 Replication and repair
   03420 Nucleotide excision repair
    VOLCADRAFT_106291
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vcn03021]
    VOLCADRAFT_106291
   03400 DNA repair and recombination proteins [BR:vcn03400]
    VOLCADRAFT_106291
Transcription machinery [BR:vcn03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     VOLCADRAFT_106291
DNA repair and recombination proteins [BR:vcn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      VOLCADRAFT_106291
SSDB
Motif
Pfam: RNA_pol_Rpb4 GGA_N-GAT
Other DBs
NCBI-GeneID: 9624192
NCBI-ProteinID: XP_002954202
JGI: 106291
UniProt: D8U6D7
LinkDB
Position
Unknown
AA seq 140 aa
MALPKQAMAQADAKVFEHAAVISNSEVATILSEYMRQRREEKPSFQPQPLVQKTLEYVQK
FNCGTNPEAVQAMRNYMENFGLKPFEWGLIANLMPEDTDEANKLIPSLVDNPDDPPEEHR
GFLPEELDRMLAELQNLRHA
NT seq 423 nt   +upstreamnt  +downstreamnt
atggcgctcccaaagcaggcgatggctcaagcggatgctaaagtcttcgagcatgcggca
gtcattagcaactcggaagtagcgacaatcctcagtgaatacatgcgccagcggagagag
gagaagccctctttccagcctcagcccctggtgcagaagacgctggaatacgtccagaaa
ttcaactgcgggactaaccctgaggccgtgcaggccatgagaaactacatggagaacttc
ggtttgaagcccttcgagtggggccttatcgccaacctgatgccggaagacacggacgag
gccaacaagctcatacccagcctggtggacaacccggatgacccgcccgaggagcaccgg
ggcttcctgcccgaggaactggaccgcatgctggcggagctgcagaacctacgacacgca
tga

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