Volvox carteri f. nagariensis: VOLCADRAFT_107338
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Entry
VOLCADRAFT_107338 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K12856
pre-mRNA-processing factor 8
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VOLCADRAFT_107338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcn03041
]
VOLCADRAFT_107338
Spliceosome [BR:
vcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
VOLCADRAFT_107338
Complex C
U5 SnRNP specific factors
VOLCADRAFT_107338
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
U5_2-snRNA_bdg
PROCT
RRM_4
PRO8NT
JAB
Motif
Other DBs
NCBI-GeneID:
9619976
NCBI-ProteinID:
XP_002956689
JGI:
107338
UniProt:
D8UDD4
LinkDB
All DBs
Position
Unknown
AA seq
2186 aa
AA seq
DB search
MWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVEPLEAIEMELDEDEDAAVYEW
LYDHQPLKYTKFVNGPSYKKWKLPLPVMATLYRLAGQLLTDFPDRNYFYLFEPQAFITAK
SLNMCIPGGPKFEPLFRDMDTRDEDWNEFNDINKLIIRSPIRTEYKVAFPYLYNNRPRKV
RLSVYHHPMSMYIKTEDPDLPAYYYDPLIHPIAAYRSATGGRRAQIEQEVGGEDDEWALP
DGVEPLLCEQPLYTDNTASGIALLWAPKPFNQRSGHTRRAFDVPLVNNWFQEHCPPSYPV
KVRVSYQKLLKNYVLNILHHRPPKSVKKKYLLRALKATKFFQSTELDWVEVGLQVCRQGY
NMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDAN
VQFRLGNVDAYQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRVCKDLKHLIYYRFNTGPV
GKGPGVGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRQSKGIAKTVTKQRIESHF
DLELRAAVMHDILDMMPEGVKQNKARTILQHLSEAWRCWKANIPWKVPGLPAPVENMILR
YVKQKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLYLKAEQERQHNYLKDGPYV
TPEEAVAIYTTTVHWLESRKYSCIPFPPLNYKHDTKLLILALERLKEQYVVAVRLNSQQR
EELGLVEQAYDNPHEALQRIKRHLLTQRSFKEVAIEFMDLYSHLIPVYEVEPLEKITDCY
LDQYLWFEADNRHLFPNWVKPADTEPPPLLVYKWCHGINNVTNVWDTTNGECVVMMQSEF
EKMYDKIDLTLMNRLLRLIVDHNIADYITAKNNVVIAYKDMSHTNSYGLIRGLQFASFII
QYYGLILDLLLLGLTRASEIAGPPQCPNEFLTFRDVKTETRHPIRLYSRYLNRVHILFRF
TAEEAKDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDMKNRL
PRSLTTFEWDNSFVSVYSRDNPNLLFSMAGFEVRILPKIRMAAESFANKDGVWALQNVHT
KERTAQAFLRVDDEGLKAFENRVRQVLMSSGSTTFTKIANKWNTALIGLMTYYREAVLHT
QELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYSPKEVGGLGMLSMGHILIPQSDLR
YSQQTDLGVTHFRAGMSHEEDQLIPNLYRYIQPWESEFMDSERVWSEYALKKEEAKAQNR
RLTLDDLDDSWDRGIPRINTLFQKDRHTLAYDRGWRVRQEMKQFQITKMNPFWWTHQKHD
GKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNA
QRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHL
WQKIHESVVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYKWNMSK
PSLMADTNDVYDQKPSNKYWVDVQLRWGDYDSHDIERYTRAKFLDYTTDNMSIYPSPTGV
MIGIDLAYNLHSAYGNWFPGIKPLVVQAMAKIMKSNPALYVLRERIRKAMERLRHASQNY
GELFSNQTVWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWA
GQKRLSQLAKWKTAEEVAALVRSLPVEEQPKRIIVTRKGMLDPLEVHLLDFPNIVITGSE
LQLPFQAAIKLEKFGDLILKATEPQMVLFNIYDDWLKTISSYTAFSRLILILRALHVNPE
KARVILRPDKSIVTQPHHVWPSLTDEQWIKVEVALKDLILADYGKKNNVNTQALTQSEIR
DIILGAEITPPSQQRQQIAEIEKQAREGGHMTAVTTKTTNVHGDDLIVTTTSPYEQAAFG
SKTEWRVRAISAANLHLRVNHIYVNSDDIRETGYTYVLPKNLLKKFICIADLRTQIAGYM
YGVSPPDNSQVKEVRCIVVAPQWGNHQIVNLPANLPEHDYLKDLEPLGWIHTQPNELPQM
APQDVIAHAKMLEAHRSWDGERCVLVTVSFTPGSCSLTAYKLTPGGYEWGRSSKDISANP
QGYKPDFYEKVQLLLSDRFMGFYMVPDTGSWNYNFMGVKHSPSMKYGLKLANPKEFYHEI
HRPTHFLEFSTLEDADPGVDVENHFA
NT seq
6561 nt
NT seq
+upstream
nt +downstream
nt
atgtggatcatgatgcgccgtgagaaacgtgatcgtcgccacttcaaacgaatgcgcttc
ccgcctttcgatgacgaggagccgccgctagactacgcggacaacttgctggatgtggag
ccgctggaggccattgagatggagctcgatgaggacgaggacgcggccgtgtacgagtgg
ctttacgaccaccagccgctcaagtacaccaagttcgttaatggacccagctacaagaag
tggaagctgcccctgccggtgatggcgaccctgtatcgactggccggccagctgcttaca
gatttccccgaccgcaactacttctaccttttcgagccgcaggcgttcatcacggccaag
agtctcaacatgtgtatcccggggggccccaagtttgagcctctgttccgggacatggac
acccgcgacgaagactggaacgagttcaacgatattaacaagctcatcatccggtcgcca
atccgcacggagtataaggtagcgtttccgtacctgtacaacaaccggcctcggaaggtc
cggttgagcgtgtaccaccatcccatgtcgatgtacattaagacggaggacccggacctg
ccggcctactactacgacccgctcatccatcccattgcggcgtaccgttctgccacgggt
ggccgcagggcacagattgagcaggaggtgggcggagaagacgacgagtgggcgctaccg
gacggtgtggagccgctgctgtgcgagcagccgctgtacaccgacaacaccgcgtccggc
attgcgctgctgtgggcgcccaagcctttcaaccagcgttccgggcacacgcgccgcgca
tttgacgtgccgctggttaacaactggttccaggagcactgccctccgtcatatcccgtc
aaggtgcgcgtcagctatcagaagctgctaaagaattacgttttgaacatcctacaccac
cggccgcccaagagtgtgaagaagaagtacctgctgcgcgcgctcaaggccacaaaattc
ttccagtcgacagagctggactgggtggaggtcggcttgcaggtgtgccggcaaggttac
aacatgctcaacctgctgatccaccgcaagaatctgaactacctgcatctggattacaac
ttcaatctgaagcccgtcaaaacgctgaccaccaaggaacgcaagaagagtcgtttcggt
aacgctttccacctgtgccgtgaaattctccgcctgacgaagttggtggtggacgcgaat
gtgcagttcaggctgggcaacgtggacgcgtatcagctggcggacggcctgcaatacatt
ttctcgcatgtcggccagctgacgggcatgtaccgctacaagtatcggctgatgcgacaa
atccgcgtctgcaaggacctgaagcacctgatctattaccgcttcaatacgggaccggtc
ggcaagggcccgggcgtgggcttctgggcgcccatgtggcgcgtctggctattcttcctg
cgtggtattgtgccgctcctggagcgatggctcggcaatttgctggcgcgccagtttgag
ggccgccagtccaagggcatcgcaaagacggtcaccaaacagcgcattgagtctcacttt
gacctggagctgcgcgcggcggtgatgcacgatatcctggacatgatgcctgagggcgta
aagcagaacaaggcccgcaccattctacagcacctttcggaggcgtggcgctgctggaag
gccaacatcccatggaaggtgcccggcctgcccgcacctgtcgagaacatgatcctacgg
tacgtgaagcagaaggcggactggtggaccaacgtggcgcattataaccgtgagcgcatt
cgccgcggtgccacggtggacaagacggtgtgccgcaagaatttgggccgcctgacgcgc
ctttacctgaaagccgagcaggagcggcaacacaattacctgaaggacgggccgtacgtg
acgcccgaggaggccgtcgccatttacaccactaccgtgcactggctggaaagccgcaaa
tatagctgcattccattcccaccgcttaactacaagcatgacaccaagctgcttatcctg
gcgcttgagcggcttaaggagcagtatgtagtggcggtgcgacttaacagccagcaacgt
gaggagctgggcctggtggagcaggcgtacgacaacccgcacgaggcgctgcagcgcatt
aagcgccatctattgacgcagcgctccttcaaggaggtggcgatcgagttcatggacttg
tacagccacctgatccctgtctatgaggttgaaccactggagaagattacagactgttac
ctagatcagtacctctggttcgaagccgacaaccgccacctgttccccaactgggtgaag
cctgccgataccgagcccccgccgctgctggtgtacaagtggtgccacggcatcaacaac
gtgacaaacgtgtgggacaccactaacggggagtgcgtggtgatgatgcagagcgagttc
gagaagatgtacgacaaaatcgacctcacgcttatgaacaggctgctgcgtctcattgtg
gaccacaacatcgcggactacatcacagccaagaacaacgtggtcatcgcgtacaaagat
atgagccacacgaattcgtacggcctcatccgcggtctgcagttcgcgtcgttcatcatc
cagtattacggcctgatcctggatttgctactgctgggcctgacgcgtgccagcgagatc
gctgggccgccacaatgcccgaacgagttcctgacgttccgtgacgtcaagaccgagacc
cgccatcccatccgcctgtacagccgctacctgaacagagtccatatattgttccggttc
accgcagaggaggccaaggacctgatccagcgctaccttacggagcaccctgaccccaac
aacgagaacattgtcggctacaacaacaaaaagtgctggccccgtgatgcacgcatgcgc
ctcatgaagcacgacgtgaacctaggccgcgctgttttctgggacatgaagaaccgcctg
ccacgctcgctgaccacgttcgagtgggacaatagcttcgtgtcggtgtacagccgcgat
aaccccaacctgctcttctccatggcgggtttcgaggtccgcattctgcccaaaatccgc
atggcggccgagtcgttcgccaacaaggacggcgtgtgggcactgcaaaacgtgcacacc
aaggagcgcacggcgcaggcgttcctccgcgtggacgatgaggggctaaaagcctttgag
aaccgcgtgcggcaggtgctcatgtcctcgggaagcaccacattcaccaaaatcgcgaac
aagtggaacacggcgcttattgggctgatgacctactaccgtgaggccgtgctgcacacg
caagagctgttggatttgttggtcaagtgcgagaacaagattcagacgcgcatcaagatt
ggccttaactcgaaaatgcccagccgtttcccgccggtggtgttttacagccccaaggag
gtcggcggcctgggcatgctctctatgggccacatcctcatcccgcagtccgacctgcgc
tacagccagcagacagatttgggcgtaacacacttcagggcgggtatgtcacacgaggag
gatcagctcatccccaatctctaccgctacatccagccctgggagagtgagttcatggac
agcgagcgcgtgtggtcggagtacgcgctgaagaaggaagaggctaaggcgcagaatcgc
cgcctgacgctggacgacttggacgatagctgggaccgtggtatcccgcgcattaacacg
ctattccagaaggatcgccacacgctggcgtacgatcgcgggtggcgggtgcggcaagag
atgaagcagttccagattacgaagatgaacccgttctggtggacgcaccagaaacacgac
ggcaagctgtggaacctgaacaactaccgcactgatgtcatccaggcgctgggcggtgta
gagggtatcctagagcacacgctgttcaaggggacgtacttcccgacgtgggagggtctg
ttctgggagaaggcgtcgggcttcgaggagtctatgaagtacaagaagctaacaaatgcc
cagcgctccggtctaaaccagattcctaaccgccgcttcacgctgtggtggtcgccaacc
atcaaccgggccaacgtgtacgtgggcttccaggtgcagcttgacctgacgggcatcttc
atgcacggcaagatcccgacgctgaagatctcgttgattcagattttccgggcgcacttg
tggcagaagatccacgagagcgtggtgatggacctgtgccaggtgttcgaccaggagctg
gacgcgctggaaatcgagaccgtgcagaaggagacgatccatccgcgtaagagctacaaa
atgaactcgtcatgcgccgacatcctgctgtttgcggcttacaaatggaacatgagcaag
ccgtcgttaatggcggatacgaatgacgtgtacgaccagaagccgtcgaacaagtactgg
gtggacgtgcagctgcgctggggcgactacgactcacacgacattgagcgctacacgcgc
gctaagttcttggactacactaccgacaatatgtccatctacccatcgccgacgggtgtc
atgatcgggattgacctggcgtacaacctgcacagcgcgtacggcaactggttccccggc
atcaagccgttggtggtccaagcgatggccaagattatgaagtcgaaccccgcgctttat
gtcctgcgcgagcgcatccggaaggctatggaacggttgaggcacgcgtcgcaaaactac
ggtgagctgttctccaaccagacggtctggttcgtggacgacacaaacgtttaccgcgtt
accattcacaagactttcgagggcaacttgactacgaagcccattaacggcgccatcttt
atcttcaacccccgcacgggccagctcttcctgaaaatcatccacacatccgtgtgggcg
ggccagaagcgcttatcgcagctggccaagtggaagacggcggaggaggtggcggcgcta
gtgcggtcgctgccggttgaggagcagccgaagcgcattatcgtgacgcgcaagggcatg
ctggatcccctggaggtgcacctgctggacttccctaatatcgttatcaccggctcggag
cttcagctgccgttccaggctgccatcaagctggagaagtttggcgatctaatcttaaaa
gccacggagccgcagatggtattgttcaacatctacgatgactggctcaagaccatttcc
tcctacacggccttctctcgcctcatcctcatcctgcgcgctttgcacgtaaaccctgag
aaggcgcgcgtcatcctgcggcccgacaagtcaattgtgacgcagccgcatcatgtgtgg
ccaagccttacggacgagcaatggatcaaggtggaggtggcgctcaaggacctcattctg
gcggactacgggaagaagaacaacgtcaacacgcaggcgttgacacagtcagagatccgt
gacatcatcctgggtgcggagatcacgccgccgtcccagcaacggcagcagattgcggag
atcgagaagcaggcgcgcgagggtgggcacatgacggccgtcaccaccaaaacgactaac
gtccacggcgatgacctgatcgtgaccaccacgtcgccgtacgaacaggctgccttcggc
tccaagacggagtggcgcgtccgcgccatctccgcggccaacctgcacctgcgcgtcaac
cacatttacgtcaatagcgatgacatccgcgagacagggtacacgtacgtgctgcccaaa
aatctgctcaagaagttcatctgcatcgccgacttgcgcacgcaaattgcgggctacatg
tacggcgtgtccccgccagacaacagccaggtgaaggaggtgcggtgcatcgtggtggcg
ccgcagtggggcaaccaccagatagtcaacctgcccgcgaacctgccggagcacgactac
ctgaaggatttggagccgctaggctggattcacacgcagcccaacgagctaccacaaatg
gcgccgcaggacgtgattgcgcacgccaagatgttggaggcgcatcgcagctgggacggc
gagcgctgcgtgttggtgacggtgtcgtttacgcccggctcatgctcgctgacggcatac
aagctgacgccaggcggctacgagtggggccgcagcagcaaggatatctcggcgaacccc
cagggttacaaaccggacttttatgaaaaagtccagctgctgttgtcagatcggttcatg
ggtttctacatggtgcctgacacgggctcttggaactacaacttcatgggcgtcaagcac
agcccgtccatgaagtacggcttgaagctggcgaaccccaaggagttctaccacgagatc
cacaggccgacgcacttcctggagttttcgacgctggaggacgcggaccctggcgtggac
gttgagaaccatttcgcgtag
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integrated database retrieval system
