Volvox carteri f. nagariensis: VOLCADRAFT_107417 Help Entry VOLCADRAFT_107417 CDS       T01330                                  Name (RefSeq) hypothetical protein   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism vcn  Volvox carteri f. nagariensis Pathway vcn03018   RNA degradation Brite KEGG Orthology (KO) [BR:vcn00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     VOLCADRAFT_107417  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:vcn03019]     VOLCADRAFT_107417 Enzymes [BR:vcn01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      VOLCADRAFT_107417 Messenger RNA biogenesis [BR:vcn03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      VOLCADRAFT_107417   mRNA degradation factors    3'-5' decay     Ski complex      VOLCADRAFT_107417 SSDB OrthologParalogGFIT Motif Pfam:  DSHCT DEAD MTR4-like_stalk DEXQc_Suv3 MTR4_beta-barrel Helicase_C ResIII DUF8738 Motif Other DBs NCBI-GeneID:  9622587 NCBI-ProteinID:  XP_002956861 JGI:  107417 UniProt:  D8UDW8 LinkDB All DBs Position Unknown AA seq 1584 aa AA seqDB search MEPAGVPDWLPQMELLFGSGGDAALVPARGELLPPLVQAPPFSALGAGAFAAGGASAAAS EAVLAAVRSAYLEHDISKALAASLPYIAHPLLTLFPRAPAWPDVSLPSAVVEPTPPPPGG REYDVGWQVVELAAAATAAPDGSSSSSTAAAAAGRIDSLALQRRLAARGGGTDSNWRGLS VSLPYMPGGGVAVLAPSGPAAAEAASGLWLAQLEAGLDRPMGLPLVAAPGLGTGLFGGWA AAAAGEGAFDGTAAAAATSALPLQRTAGVLQPLPLTTPAGERIKPLAEALQGGGGAAAAI AGSQLGGEGTAATGSGSRSRAIAGTFADLWLEPELAAVSEVEEHGEDAAEGAGTDGTARR RGGGSGGVLAELETRTAAAEAEGDGRLAEVLAAAAAAATARLPPTATKGLPGGPTPDHPF AARHSIRNVDEEFEKLRPRLALHYPFELDTFQKEAVLHLEAGRSVFVAAHTSAGKTVVAE YAFALATQHCTRAVYTSPIKTISNQKFRDFSSKFEVGLLTGDVQVRPTAPCLIMTTEILR SMLYKGADLIRDVEVVVFDEVHYVNDVDRGVVWEEVIIMLPPHITLVLLSATVPNVMDFA DWVGRTKRKVIHVTGARARTTKRPVPLEHSLYYGGEIYPICSREVFNPEGLRATRGGGPN RGGPGGGGGFRSERQQLLELVGVLGKRAMLPVAVFCFSKKRCDICADALSSLDLATGSEK AAVHSFVDRCLARLKEGDRQLPQILRLRDMMRRGIAVHHAGLLPIMKEVVEMLFCQGYIK VLFCTETFAMGVNAPTRTVVFHSLRKHDGKNFRYLLPGEYTQMAGRAGRRGLDAVGHVLL ACWDERELYGESELRTMLLGRGVKLESQFRLTYGMILNLLRVEDLKVEDMLKRSFAEFHA QRAAPAGAAELSDVERRLAAAAAAPWPATSLGCSREEVEEYADLCEQLEVLYAQLQDALV ANKSFQQALVPGRLVLYGNPVNGLTEPAVVLGDAPAPAPPSSSTSPLTNKTTTTNNLTTA TGNAVGTAATSAGSSSGLGLGIGTAAGSAASGDRRLFLLVLHRPGSMDEQHERQAEQERR SREGPAAGGGGGGGLSPAGFGGMTSLQSRKQQELDDMFGGMVKVGERMLNCRTIACVVHV PYVSYMYKRSIVGVCRARLRLDGADDILSCGGDWTANAVRRALASALRGAARAVDEAAAD GGGGELPLLDPRVDFKIADVAAVQAMLARAALQSRRAALRPHRDPGLVEAFQLVRTHRQL SRRAAELRHQLSDASLQQLPEFEQRVAVLQRLGYLEADRSVTLKGRVCCEIQSTQDELVA TEAVFSGLLGELSPEEAVALLSALVFQEKSEVEPRLPPSLASARDSLTALTASLAGIQRE GGLDVVPEQHVAEVLHCGLMEVVYEWARGTPFSAITELTDVMEGSVVRAMVRLDGACREL QDAARVMGNTALFQLMQAASAAIKRDVIFAASLSTLAQNPTYLTYQPTYLTLTNCTHGNV ILGWVNSLFTVNVTSYSQCYSHQWPRLTDLAPPLLPLYCWLPWYHLLKVNYSPPRTTYNN MIALPPSGSPPPAWGLLPASLRYA NT seq 4755 nt NT seq  +upstreamnt  +downstreamnt atggaacctgccggtgttccggactggctcccacaaatggagttgctgtttggatcaggt ggcgatgccgcgctggtgcctgctcgaggggagctcttgcccccgctggtgcaggcccca cccttcagcgcccttggtgccggcgcgttcgctgctggtggcgcttccgccgcagccagc gaagccgtacttgctgctgtacggtccgcctacctggagcacgacatctcgaaggcgctg gcggcatcgctaccgtacatcgcacaccccctcctcactctgttcccacgcgcgcccgcc tggccggatgtatcgctgccatccgccgtggtggagcccacgccgccgccgccggggggc cgcgagtacgacgtcggatggcaggtggtggagctggcggcggcagcgacagcggcacct gacggctcctcctcctcctccaccgccgccgccgccgccggcaggattgacagcttagcg ttacagcggcggttggcagcacgtggcggcggcacggactcgaactggcgggggctctcg gtgtcattgccgtacatgccaggtggcggtgtggcggtactcgctccctcgggtccggcg gctgcggaggccgctagcggactgtggctggcacagctggaagcgggactggaccgaccc atgggtcttcccctggtggcggcaccaggcctggggaccggactgtttggcggctgggcg gcggcggcggcgggtgagggagcgttcgacggcacggcggcggcggcggccacatcggcg ctgccgctgcagcgtacggcaggcgtactgcaaccgctcccgctgacgacgccggctggt gagcggatcaagccgctggcggaggctttgcagggcggaggcggagcagctgccgcaatc gctggatctcaacttggcggtgagggtacggcagcgactggatctggatccagatcccgt gctattgcgggaacgtttgcggatctttggttggaaccggaactggcggcagtgtcggag gtcgaagagcacggagaagacgcagcggagggagctggtacggatggtacggcacggcgc cgcggtggcggcagtggtggtgtacttgcggaactggagacgaggacggcggccgcggaa gcggagggtgacggcaggctggcggaggtgttggcggcggcggcggcggcggccacagcg cgtctcccccccaccgcaaccaaaggcctgcccggggggcctacccccgatcaccccttc gccgcccgccacagcattcgaaatgtggatgaggagttcgagaagctccgcccccgcctc gcgctgcactacccctttgagctggacacgttccagaaggaagccgtactgcacctggag gcgggcaggagcgtgtttgtggcggcgcataccagcgccggtaagaccgttgtggcggaa tacgccttcgccctggccacccagcactgcacccgggcggtgtacacctcgcccatcaag accatttccaaccagaagttcagggatttctcgtccaaatttgaggtgggcctcctgacg ggtgacgtacaagtacgaccaaccgcgccgtgtctaatcatgaccaccgagatcctccgg tctatgctgtacaagggcgccgacctgatccgtgatgtggaggtggtggtgtttgacgag gtgcattacgtgaatgacgtggaccgcggtgtggtgtgggaggaggtcatcatcatgctg cctccccacatcaccctcgtactgctgtccgccaccgtacccaacgtcatggacttcgcc gactgggtgggacgaaccaagagaaaagtcattcacgtgacaggcgcgcgcgcgcgtacg accaaacgtcccgtgccgctggagcacagcctctactacgggggggagatataccctatc tgctccagggaggttttcaacccggaaggattacgtgccacccgtggcggagggcccaac cgaggggggcccggtgggggaggagggtttcggagcgagcggcagcagctcctagagctg gtgggggtcctgggcaagagggccatgctgccggtggccgtgttctgcttcagtaagaag aggtgtgacatatgcgctgacgcgctgtcctccctggaccttgccaccggctctgagaag gctgccgtacactcgtttgtggaccggtgtttggctcgactgaaggaaggtgaccggcag ctgccccagatcctacgtcttcgcgacatgatgcggcggggtattgccgtacaccacgcg gggttgctacccatcatgaaggaggtggtggagatgctgttctgccagggatacatcaag gttctgttctgtacggaaaccttcgccatgggggtcaatgcccccacccgtacggtggtg tttcactcactcaggaagcacgacggaaagaacttcagatacctccttcccggggagtac acgcagatggcaggtcgcgccggtcgccgcggtttggatgccgttggccacgtgctgttg gcgtgctgggacgagcgggagttgtacggcgagagcgagttacgtaccatgctgctgggt cggggggtgaagctggagagccagtttaggctcacgtacggcatgattctcaacctgctt cgagtggaggatctgaaggtggaggacatgttgaagcgctcctttgccgagttccacgcg cagcgggccgcccccgcgggggccgcggagctcagtgacgtggagcggcggctggcggcg gcggcggccgccccctggcccgccacctccctgggctgctccagggaggaggtggaggag tacgcggacctgtgcgagcagctggaagtgctgtacgcgcagttgcaggatgccctcgtc gccaacaagtcgttccagcaagctctggtgcctggtcggctcgtcctgtacggcaacccg gtcaacgggttgaccgagccggctgtcgtacttggagatgccccggcgccggcacctcct tcctcgtcgacctcccccttgacgaacaaaacaaccactaccaacaacctcacaaccgct actggtaatgccgttggtacggcagcgaccagcgccggcagtagcagcggccttggtctt ggcatcggtacggcagcaggctcagcggcatccggcgaccggcggctgttcttgctcgtc ctgcatcggcccggcagtatggacgagcagcatgagcggcaggccgagcaggagcgacgc tccagggagggacctgcggcgggtggcggtggcggcggcggcctttcaccggcaggcttt ggcggcatgacatcgctccaatctcgcaagcagcaagagcttgatgatatgtttggtggt atggtcaaggtcggggaaaggatgctgaattgtcgtacaattgcttgtgtcgtccatgtg ccgtacgtgtcgtacatgtacaaaaggtccattgtgggagtctgccgggcgcgactgcgg cttgacggcgccgacgacatcctctcttgcgggggagactggaccgccaatgccgtacga cgggcactggcgtcggcgctccgcggtgcggcacgggccgtcgacgaggcggcggctgac ggcggcggcggcgagcttccgttattggacccacgggtcgatttcaagattgctgacgtg gctgccgtacaggcgatgctggcacgcgccgcgctgcagtcccgccgagccgccctccgg ccgcatcgcgaccccgggctggtggaggccttccagcttgttcgcactcaccgtcagctg tcccggcgggcggctgagttacgacaccaactcagtgacgccagcctccaacagcttccc gagttcgagcagcgtgtggcggtgttacagcggctgggttacctggaggcggacaggtct gtaacgctcaagggccgtgtgtgctgcgagatacagtccacgcaggacgagctggttgcc accgaggcggttttcagcgggctgctgggcgagctcagtcccgaggaggcggtggcgctg ctgtcggcattagtgttccaggagaagtccgaggtggagccccggctgccgccctccctg gcctccgcccgcgactccctcaccgccctcaccgcctccctagccggcatacagagggag ggcggactggatgtggttccggagcagcacgtggcggaggtgctgcactgcggtctgatg gaggtggtgtacgaatgggcccgtggcactcccttctccgccatcacggagctaaccgac gtgatggagggctccgtggtgcgggccatggttcgactggatggggcgtgcagggagctg caggacgcggcccgggtaatgggcaacacggctctgtttcagctcatgcaggcagccagt gccgccataaagcgtgacgtcatcttcgcggcgtcgcttagtaccctggctcaaaaccct acctacctgacctaccaacctacctacctgactctcacgaactgcacccacgggaacgtc attttgggttgggtaaactccctcttcactgttaatgtgacaagctacagccaatgctac agccaccaatggccacgtcttaccgacctcgcgccgccgctactgccgctatattgctgg cttccatggtatcacctgctcaaggtcaactactcccccccccgcaccacctacaataac atgatcgctttgcccccctccgggagccccccccccgcctggggcctcctgcccgcctcc ctacggtatgcatga

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