Volvox carteri f. nagariensis: VOLCADRAFT_107972
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Entry
VOLCADRAFT_107972 CDS
T01330
Symbol
rfc1
Name
(RefSeq) DNA replication factor C complex subunit 1
KO
K10754
replication factor C subunit 1
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03030
DNA replication
vcn03410
Base excision repair
vcn03420
Nucleotide excision repair
vcn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VOLCADRAFT_107972 (rfc1)
03410 Base excision repair
VOLCADRAFT_107972 (rfc1)
03420 Nucleotide excision repair
VOLCADRAFT_107972 (rfc1)
03430 Mismatch repair
VOLCADRAFT_107972 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcn03032
]
VOLCADRAFT_107972 (rfc1)
03400 DNA repair and recombination proteins [BR:
vcn03400
]
VOLCADRAFT_107972 (rfc1)
DNA replication proteins [BR:
vcn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
VOLCADRAFT_107972 (rfc1)
DNA repair and recombination proteins [BR:
vcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
VOLCADRAFT_107972 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
AAA_22
RuvB_N
RNA_helicase
PTCB-BRCT
nSTAND3
Gp44_lid
AAA_17
Sigma54_activ_2
Zeta_toxin
BRCT_2
RCF1-5-like_lid
AAA_33
AAA_14
AAA_assoc_2
AAA_16
AAA_28
TIP49
RPEL
DDE_Tnp_IS66
DUF1824
SAGA-Tad1
Motif
Other DBs
NCBI-GeneID:
9623225
NCBI-ProteinID:
XP_002958129
JGI:
107972
UniProt:
D8UHI8
LinkDB
All DBs
Position
Unknown
AA seq
963 aa
AA seq
DB search
MTNDSRDLAGLQLVVVRVASVEVAAAPAAKRRRVIGDDDDDDAVMVGSSSDDDDDDFEDL
EDEQSSGSMDEDVAMLREDAAGGSKRKQGVPKPSKLTGTKRSLVVADKPVVSPKAAKSAE
VKAADAEPSAKKTARVSGAAAGGSARKSAASSKKPASFSLDPNADAAIAAVSKAAEQLPP
EEQLNFSLVPEGADAAGNDSAEPPNYRKKEVPRGHPDCLTGRTFVITGILDSLMRPEAED
LIKRHGGKVTKSVSGKTAFVVVGHNCGRGKYRDAKQHKTKLIDEDGLFALLKASASFAPA
ERPAAAAAAAAIPSSICTSNFGPTAAARAGPGGAGPSAVRKPTGPYTTPQPSQPPAGGGG
GGLYQLWVDKYKPRNSSELVGNNTLVANLKQWLESWEQVHLRGAAAPTAKGGGSKPKDLS
KKAALLSGPPGIGKTSAAHIIAREAGFEVVEMNASDTRNKSTKVSDGIAGKQSNVIKEMV
SNTTLPGLGDAGGKHRKQLLIMDEVDGMSGGDRGGIQDLIDTIKRSKIPIICICNDKYNQ
KLRSLRNHCMELEFRKPTVQQISKRMSEICQKEGLQINQATMDALVSGAGGDLRLILGQL
QMVRLRARALTYDEVRGKMGTSKDTDMSPFECARRLLEPACSLLSMGDRMELVFADMDLV
PLLVQENYVNHRPTIAPDLPARLRAMAKAADSISFGDVVNNTLRRSQNWSLMPFAAVMSC
LLPVAYMRGPREIFGLYPTEMNFPSAVRLEYASALRRLLVRPLVREQEAAVPAVVELMHG
YCIDREQFDFILDVTSFKSKAAWAEDMFKDVPTKVKSAFTRSLNSTAPAARCLAQVEEVK
LGRGAGKGKGKGRKAAAEEDDEEGPLEGEDAEQEAKPVERAAGEGGGQGEQEDEEDVDPA
TLARRLAKDGLVVQLQDDGKGTRGKKGGGRGGGNGAAKASGAGRGGGAGRGAGRGAGKAA
AKK
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatgactctcgcgatttggcagggctgcagctggtggtggtaagggtggcgtcg
gtggaggtggcagcggcgcctgcagccaagcggcgccgtgtgattggcgacgacgatgac
gatgatgctgtcatggtgggatcctcttccgatgacgacgacgacgactttgaagacctc
gaggatgagcagagcagtgggagtatggacgaggatgtggccatgttgcgcgaagatgcg
gccggcggcagcaagcgcaagcagggcgtgcccaagccgtccaagctgaccggcaccaaa
cgatcactggtggtggcggataagccagttgtatctcccaaggccgcgaagtccgccgag
gtcaaggcggcagatgcggagccgagcgccaagaaaacggcccgtgtgagcggcgccgct
gcaggcggcagcgcacgcaagtcagcagcttcatcaaagaaaccggcgtccttcagtctg
gaccccaacgcagacgccgccatcgctgctgtgagcaaggcagcggagcagctgcccccc
gaggaacagctcaactttagcctggttcccgagggcgcagatgcggctgggaatgatagc
gcggagccaccaaactaccgcaaaaaggaggttcctcgcggccatcccgactgcctgacg
ggccgcacgttcgttatcacgggcatactggacagcttgatgcgtccggaggcggaggac
ctgatcaagcggcacggcggcaaggttacaaagagcgtgtctggcaagacagcgtttgtg
gtagttggccacaactgcggacgtggcaagtaccgcgatgccaaacagcacaagaccaag
cttattgatgaagacggtctctttgcactgctcaaagccagtgcttccttcgcgcctgct
gagcggcccgcggccgcagccgccgccgcagcaataccctccagcatttgcacgtcgaac
ttcggtcccacggctgccgccagagcggggcccgggggcgctggtcccagcgccgtgcgc
aagccgactgggccctacacaaccccgcagccgagccagccacctgctggcgggggcggc
gggggcctgtaccagctgtgggtggataagtacaagccgcgaaacagctcggagctggtc
gggaacaacacgctagtggccaatctgaagcagtggctggaaagctgggagcaggtccac
ctgcgtggagccgctgctccgactgcgaagggcggcggctccaagcccaaggacctgtcc
aagaaggccgcactgctcagcgggccgcccggcatcggcaagactagcgcagcgcacatc
atcgcacgagaggcggggtttgaggttgtcgagatgaacgccagcgacacgcgcaataag
agcaccaaggtctcggacggcatcgcgggcaagcagtccaacgtcatcaaggagatggtg
tctaacactacgctgccggggctgggggatgccggtgggaagcaccgcaagcagctgctc
atcatggacgaggtggacggcatgtcgggcggagaccgcggcggcatccaggacttgatt
gacaccatcaagcgctccaagattcccatcatctgtatttgcaatgacaagtacaatcag
aagctgcgttccctgcgcaaccactgcatggagctggagttccgtaagcccacagtgcag
cagatctccaagcgcatgagtgagatctgccagaaggagggcctgcagatcaaccaggcc
accatggacgccctggtctcgggggcgggtggagatctgcgcctcatcctaggacagctg
cagatggtgcgactgcgggcccgtgcccttacttacgacgaggttcgtggcaagatgggc
accagcaaggacacggacatgagtccctttgagtgcgcccgccggctgctggagcccgcc
tgctcgctcctgtcgatgggcgaccgcatggagctggtgtttgcggacatggatttagtg
ccgctgctggtgcaggaaaactacgtcaaccatcggcccaccatcgcaccggatctgccg
gcgcgccttcgtgccatggccaaggccgccgactctatttcctttggcgacgtggtcaac
aacacgctgcgccgcagccagaattggagcctgatgcccttcgcggcggtcatgagttgc
ctgctgccggtggcgtacatgcgcggacctcgggagatcttcggtctctaccccacggaa
atgaactttcccagcgccgtgcgccttgagtacgcctccgcgctgcgccgcctgctggtg
cggccgctggtgcgggagcaggaggccgctgtgcccgcagtcgtggagctcatgcacggc
tactgcatcgacagggagcagtttgatttcatccttgacgttacctcgttcaagagcaag
gcggcgtgggcggaggatatgttcaaggacgtgcctacaaaggtcaagtcggcgtttacc
aggagcctcaactctacggcgcccgcggcccgctgcctggcacaagtggaggaggtcaag
ctgggccgtggggctggcaaaggcaagggcaagggccggaaggcggctgctgaggaggat
gacgaggagggcccgctggaaggggaggacgcggaacaggaggcgaagccggtggagaga
gctgctggcgagggtggtgggcagggagagcaggaggacgaggaggatgtggacccggct
actcttgcgcggcgcctcgcgaaggacggtctggtggtgcaactgcaggacgacggcaag
ggcaccagggggaaaaaaggaggcggtcgcggcggtggcaatggcgcggccaaggcgtcc
ggcgcgggccggggtggtggcgcagggcggggggctggccggggggccggcaaagcagcg
gcgaaaaagtag
DBGET
integrated database retrieval system
