Volvox carteri f. nagariensis: VOLCADRAFT_108284 Help Entry VOLCADRAFT_108284 CDS       T01330                                  Name (RefSeq) hypothetical protein   KO K14809   ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7] Organism vcn  Volvox carteri f. nagariensis Brite KEGG Orthology (KO) [BR:vcn00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03009 Ribosome biogenesis [BR:vcn03009]     VOLCADRAFT_108284 Enzymes [BR:vcn01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.7  DEAD-box RNA helicase      VOLCADRAFT_108284 Ribosome biogenesis [BR:vcn03009]  Eukaryotic type   Pre-60S particles    Helicases     VOLCADRAFT_108284 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DEAD Helicase_C CTE_SPB4 2OG-FeII_Oxy_3 DnaJ Motif Other DBs NCBI-GeneID:  9628188 NCBI-ProteinID:  XP_002958747 JGI:  108284 UniProt:  D8UJA2 LinkDB All DBs Position Unknown AA seq 1517 aa AA seqDB search MPAALEDLRRRLAAKEATVRAKQYDQAARQAAELSKKCLPSPFLQAAQRAEAEQRRAQLS RGLAALAEASSVAGGGEQGAATAGGGAGSGSGSGPSTRLAGPEDVRRVLRAASDYEVLQL PVGSTAAEVRRAYRRLAACLHPDKCREEGAQEAFIRAAAAYNGLLRRCGGDRSAIATNIS TRNLIHQLDLVSVAPQQKAIRKPDTPDQCGGLPRKVCSGKTLAFVLPVIERLRRLEEALK THQVGAIIISPTRELAKQIYGVAGPLIASVPGLTSMLLVGGTDPAQDVAAFKSRGAHVLV GTPGRIDDIVKRCTAMDLKRLEVLVLDEADRLLDLGFRAQLDSVMSRLPRQRRTGLFSAT QTEAVQELARAGLRNPVLVNVAVTAVAAAAAAAAPQGAAGSGKKAKVGAAGGEVEGLEEA AAAGGGDGAVGLQKTPNSLSIQYVMCEADEKIPQLVRFLRLYGTNCKIIVYAMTCAVVDY LSLVLPRLPALRRVKMRALHGRMKQAARERELEAFRQLSAGALLATDLAARGLDIPDVHW VVQLDPPQDPAAFVHRVGRTARMGRQGSALAYLQPHEEPYLEFLRLRKIPITETSQLPPT SGRGEGGPQAAAASDPPRPEEQPHGHRNKKRKGQQQGQQQGAHVEEGKGGAGADRGEGRS LVKGGVGNGNATSGGSPNGRLVGEGSATATATDGGGGGDGVGDVVSWLRGAAEREREVME GATRAFVTYVRAYKEHQCKFIFRLQDLNVGRLARGLGLLRLPKMPDVKKPLGLEHFTPSQ VDPMTVPYKDKPREKQRLKAIEQRRAAAGAGGAPGGRGSGAAAKRKAPGGPDAGGSECRL PAAKRRQLQLIDEATNLNQEYSLLKKLKKGKITEHQYDVATGLSSDSDAEEEAAAAAGGA GKGRGGDEGGAGEGARENGIAGSPDSSDSDSDRDSSGGGGGGGDARGTGGRGPQAARNGG GGGGGGRASAVAFRRRARSVRGGAVSGGKGLGRGAGGPGHNGAIRRSTSRPLPAANAPTA EPSTNPSPPLPPPPALLLLRLLPTTDSGYGCRVQAGRQAGGPPKGLLQLGPPRLLAQELL QYGLRIDDINLTRALRRYRETSAAAATAAAGSGGGGSGSSNGGTGDEAAASGELLLPPPS AAGPGALATASPPDGRTQLLLLGSVQLVDAGEGQGVGAAGGSVGPYLIMKPAGRRRLREP QQEREVEGGGAVCGTVREADELWLTWRMEVAGVDKGGEVVKKIAVPGELSHLFRPGQRGW GVQGLLSASELDALLGCSRLRRIRPVSECEVMLASISPRVVLVDDFLPACLCDALRAVAE PRLIRSRVSTGAETPSRVSHSTFFTGDSARLAEVVAVEALIQQLLERTEVTGGGRPTLVK SEALQVVSYDVGGFYSEHYDNKAGGVISRAATVIIYLEDTPQGGATFFPKSTGLPSLDSL SRAMPALDAIPQLTYQLHAMRVARPGLRIYPAKGRAVIFWSRLVDGSEDLASLHAAEPVR AGSKWICTRWFKELAAT NT seq 4554 nt NT seq  +upstreamnt  +downstreamnt atgccggcggctttggaggatttgcggcggcggctggcagccaaggaggcgacggtgagg gccaagcagtacgaccaggcagcgcgacaggcagcagagctctcaaagaagtgtctccct tccccgtttctgcaggcagctcaacgggcggaggcagagcagcgcagggcgcagctaagc cgggggttggcggcgctggcggaggcgtcatcggttgcggggggaggggagcagggggcc gcgacggcgggggggggggctggatccggatccgggtcgggcccatccacgcggctggct ggccccgaagatgttcggcgggtgctgagggctgcatcggattacgaggtgctgcagctg ccggtgggcagcactgcagctgaggtccgccgcgcctaccgccgcctggcggcctgtctg cacccggacaagtgccgcgaggagggagcccaggaggcgttcatccgggcagcggccgca tacaacgggctgctgcgccgctgcgggggagacaggtcagccatcgccaccaacatcagc acgcgaaacttaatccatcaactagacctcgtctccgtagcacctcaacaaaaagcaatc cgtaaacctgatactcccgaccaatgtgggggtctgcccaggaaagtatgttctggaaag acgctggcgttcgtgctgccagttatcgaacggctcagaagactggaggaggccttgaaa acacaccaggttggggcaatcattatatcgccaactcgagagctcgcgaagcagatttat ggcgttgcggggccattaattgcgagcgtgcccggccttacatcaatgctgctggtcgga ggaacggaccccgctcaggacgtggcggccttcaagtcccgcggtgcgcacgtgctggtc ggcaccccggggcgcatagatgacatcgtcaagcgatgcaccgccatggacctaaagcgc ctggaggtcctggttcttgacgaggccgaccggctactggacctgggcttccgcgcccag ctggactcggtgatgtcccgactgccccggcagcgcaggaccggactgttctcggccacg cagacggaggcggtgcaagagctggccagagcggggctccggaaccccgtcctggtgaat gtggcggtcacagcagtagcagcagcagcggcagcggcggcaccgcagggggcggccggt agcggtaaaaaggcgaaggtgggggcggccggtggggaggttgaggggctggaggaggcg gcggcggctggtggtggtgacggcgcggtcgggctgcagaagacgcccaacagtctgagc atccaatacgtcatgtgtgaggcagatgagaagattccgcaactggtccggttcctccgg ctgtacggcactaattgtaagattatcgtgtacgccatgacgtgtgcggtcgtggactac ttgtctctggtgctgcctcgcctgcccgcgctgcggagagtgaagatgcgggcgctgcac ggccgcatgaagcaggcggcgagggagagggagctggaggcattccggcagctgtcggca ggtgctctgctggccaccgacctggcggccaggggtttggatatccccgacgtacactgg gtcgtacagctggatccaccccaggatccagccgcgttcgtacaccgagtgggtcgtaca gcccgcatgggtcgccaggggagtgcactcgcgtacctgcagccgcacgaggagccctac ctggagttcctccggctgaggaagatccccatcacggagacaagccagctgcccccgaca tcgggtcggggggagggcggcccccaggcagcggccgccagcgaccccccccggcccgag gaacaaccccacggacacagaaacaagaagaggaaggggcagcagcaggggcagcagcag ggggcgcatgttgaggagggaaaggggggcgcgggtgcggaccggggtgagggccggagc ctagtaaagggcggggtggggaacggcaacgccacgtccggcggcagcccgaacgggcga cttgttggggagggcagtgctactgctactgctactgatggtggtggtggtggtgatggt gtgggggacgtggtttcctggctccgcggggcggcagagcgggagcgggaggtgatggag ggcgccactcgggcctttgtgacatacgtgcgggcgtacaaggagcaccagtgcaagttc attttcagattgcaggatctgaacgtgggtcgtctagcccgggggctggggctgctgcgg ctgcccaaaatgcccgacgtgaagaagcccctggggctggagcacttcacaccgtcgcaa gtggatccaatgacagtgccgtacaaggataagccccgggagaagcaacggctcaaggcc atagagcagcggcgagccgcagcgggcgcgggaggtgccccggggggtcgggggagcggc gcggcggccaaacgtaaggcccccgggggcccggacgccgggggttccgagtgccgccta cccgcggccaagcggcggcagctgcagctcattgacgaggcgaccaacttgaaccaggag tacagtcttcttaagaagctcaagaagggcaaaatcactgagcaccagtacgacgtggcg acgggactgtcctcggactcggacgcggaggaggaggcggcggcggcggcgggtggcgcc gggaagggccggggaggcgatgagggcggggcgggggagggggcgagggaaaacggtatt gctggaagtcccgacagcagcgacagcgacagcgacagggacagctccggaggtggtggt ggtggtggagatgccagggggacggggggacggggaccgcaagctgcccgaaatggcggt ggtggtggcggtggagggcgggcgtctgcagtggcgttccgtcgcagagcccggtcggtc cgtggcggcgccgttagcggggggaagggtttggggcggggggcggggggtccgggacac aacggggcaatccgccgaagcaccagccggcccctcccagctgccaacgccccaactgcc gaaccatcgaccaacccgtcaccaccacttccaccaccgccggcattgctgctgctgcgg ctgctccctacgaccgactcggggtacggctgccgggtccaggctggcaggcaggcaggc gggcccccaaaaggtctcctacagctgggccccccgcggcttcttgcccaggaactcctg cagtacggtctgcggattgatgacatcaacctgacccgggctttgaggcgatatcgagag accagtgccgcagcggctactgccgccgccggcagcggcggcggcggaagcggcagtagc aacggcggtacgggcgacgaggccgcagcctccggggagttgctactgccacctccctcg gctgccggccccggcgctttagctacagcctcacctcctgatggccgtacgcagctgcta ctgctgggctccgtacagctcgtggatgccggggagggtcaaggagtgggtgcggcaggc ggctctgttgggccctatttgatcatgaagccagccgggaggaggaggctgagggagccc cagcaggaaagggaggtggagggggggggagcagtgtgcggcactgtacgggaagctgac gagctgtggctgacgtggcggatggaggtggcgggagtggacaaggggggcgaggtggtc aagaagattgccgtaccgggggagctgtcccacctgtttcgcccaggccagcgggggtgg ggggtgcaggggttgctgtccgcctcggagctcgacgcgctactgggctgcagccggctg cggcgcattcggccggtttcggagtgcgaggtgatgctggccagtattagcccccgtgtt gtgctggtggatgacttcctgcccgcatgtttgtgcgacgcgctgagggcggtggcggaa ccaagactcattcgcagcagagtgtcgacgggagctgagacccccagccgcgtgagtcac tccacgttcttcacgggtgactcagcccggctcgcggaggtggtggcggtggaggcgctc atccagcagctactggagcgcaccgaggtgacggggggcggcagacccacgctggtgaag agcgaggcgctgcaggtggtgagttacgacgtgggcgggttctacagcgagcactacgac aacaaggcgggcggggtcatcagccgggccgccaccgtcatcatatacctggaggacacg ccgcaggggggcgccacgttctttcccaagtcgacggggctgccctccctggatagcctc tcccgcgccatgcccgccctggacgccattccgcagctcacgtaccagctgcacgcaatg cgagtggcgcggccggggctccgcatataccccgccaagggccgcgcggtcatcttctgg tctcgactggtggacggctccgaggacctggcgtctctgcacgccgcagagcccgttcgc gcgggcagcaagtggatttgcacccgctggttcaaggagttggcggccacctaa

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