KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_109137
Entry
VOLCADRAFT_109137 CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03018  RNA degradation
vcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VOLCADRAFT_109137
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VOLCADRAFT_109137
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcn03019]
    VOLCADRAFT_109137
   03041 Spliceosome [BR:vcn03041]
    VOLCADRAFT_109137
Messenger RNA biogenesis [BR:vcn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     VOLCADRAFT_109137
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     VOLCADRAFT_109137
Spliceosome [BR:vcn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    VOLCADRAFT_109137
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 9615831
NCBI-ProteinID: XP_002951651
JGI: 109137
UniProt: D8TZ17
LinkDB
Position
Unknown
AA seq 108 aa
MSGKAKESAVDLAKFVDKGVRVKLAGGREVQGILKGYDQLLNLVLDEAVEYLRDPEDPLT
VTDETRLLGLMVCRGTAVMLVAPSTGMEEIANPFLQKEDKDGEDAGAA
NT seq 327 nt   +upstreamnt  +downstreamnt
atgtctgggaaggcaaaagagtcggctgtagacttggcaaagtttgtagacaaaggagtg
cgtgtaaagttagcaggaggcagagaagtgcaagggatcttgaagggctacgaccagctg
ctgaacctggtgctcgatgaagctgtggagtatttaagagacccggaggatcccctaacg
gtaaccgacgagacacgattgcttggactgatggtttgccgtggtacggctgttatgttg
gtggcaccctccactggtatggaggagattgccaacccattcctgcagaaagaggacaag
gacggagaggacgcgggagccgcatag

DBGET integrated database retrieval system