Volvox carteri f. nagariensis: VOLCADRAFT_109137
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Entry
VOLCADRAFT_109137 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03018
RNA degradation
vcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VOLCADRAFT_109137
09123 Folding, sorting and degradation
03018 RNA degradation
VOLCADRAFT_109137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcn03019
]
VOLCADRAFT_109137
03041 Spliceosome [BR:
vcn03041
]
VOLCADRAFT_109137
Messenger RNA biogenesis [BR:
vcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
VOLCADRAFT_109137
mRNA degradation factors
5'-3' decay
Lsm complex
VOLCADRAFT_109137
Spliceosome [BR:
vcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
VOLCADRAFT_109137
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
9615831
NCBI-ProteinID:
XP_002951651
JGI:
109137
UniProt:
D8TZ17
LinkDB
All DBs
Position
Unknown
AA seq
108 aa
AA seq
DB search
MSGKAKESAVDLAKFVDKGVRVKLAGGREVQGILKGYDQLLNLVLDEAVEYLRDPEDPLT
VTDETRLLGLMVCRGTAVMLVAPSTGMEEIANPFLQKEDKDGEDAGAA
NT seq
327 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggaaggcaaaagagtcggctgtagacttggcaaagtttgtagacaaaggagtg
cgtgtaaagttagcaggaggcagagaagtgcaagggatcttgaagggctacgaccagctg
ctgaacctggtgctcgatgaagctgtggagtatttaagagacccggaggatcccctaacg
gtaaccgacgagacacgattgcttggactgatggtttgccgtggtacggctgttatgttg
gtggcaccctccactggtatggaggagattgccaacccattcctgcagaaagaggacaag
gacggagaggacgcgggagccgcatag
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integrated database retrieval system