KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_109457
Entry
VOLCADRAFT_109457 CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03020  RNA polymerase
vcn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VOLCADRAFT_109457
  09124 Replication and repair
   03420 Nucleotide excision repair
    VOLCADRAFT_109457
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vcn03021]
    VOLCADRAFT_109457
   03400 DNA repair and recombination proteins [BR:vcn03400]
    VOLCADRAFT_109457
Transcription machinery [BR:vcn03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     VOLCADRAFT_109457
  RNA polymerase III system
   RNA polymerase III
     VOLCADRAFT_109457
  RNA polymerase I system
   RNA polymerase I
     VOLCADRAFT_109457
DNA repair and recombination proteins [BR:vcn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      VOLCADRAFT_109457
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NA-iREase1 Mrr_cat LpxI_N
Other DBs
NCBI-GeneID: 9628127
NCBI-ProteinID: XP_002958651
JGI: 109457
UniProt: D8UJ16
LinkDB
Position
Unknown
AA seq 202 aa
MDNLTRLWRVRRTCLQMLNDRGYLVSQEEINTSKDQFRDRFGENPRKDDLTILVPKQDDP
TEQMFVFFPEEQKVGVKTIKLLAERMKDEKVNRAIMVTAVKFTPFAKSALEDMRPKYCIE
HFLESELLVNITEHTLVPEHRILSPDEKRTLLDRYKIKETQLPRIQSSDAVARYLGLQRG
QVVRIVRPSETAGRYVTYRFCV
NT seq 609 nt   +upstreamnt  +downstreamnt
atggataacctcactcgattatggcgggtccggcggacatgcctccaaatgctaaacgac
cgtggttacctcgtcagccaggaagagattaacacatcaaaggaccaattccgcgataga
tttggcgagaatcccaggaaagacgacctcaccatcttggtgcccaagcaggatgacccg
accgagcagatgtttgtcttctttccggaggagcaaaaagtcggagttaaaacaatcaag
ctgcttgcggagcgcatgaaggacgagaaggtgaacagggccatcatggtaaccgccgtc
aagttcacgcccttcgccaagagcgccctggaggacatgcgacccaagtactgcatcgag
cactttttggagtctgagctgctggtcaacattacggagcacacgctggttccggagcac
cgaattctaagtcccgacgagaagcgaacgctgctggaccggtacaagatcaaggagact
cagctgccgcgcatccagtcctcggacgctgtggcccgttacctgggcttgcaacgaggc
caagtggtcaggattgtacgaccaagtgaaactgcaggacgatatgtgacgtacaggttt
tgcgtgtaa

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