KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_117128
Entry
VOLCADRAFT_117128 CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K10140  DNA damage-binding protein 2
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03420  Nucleotide excision repair
vcn04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    VOLCADRAFT_117128
  09124 Replication and repair
   03420 Nucleotide excision repair
    VOLCADRAFT_117128
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:vcn04121]
    VOLCADRAFT_117128
   03400 DNA repair and recombination proteins [BR:vcn03400]
    VOLCADRAFT_117128
Ubiquitin system [BR:vcn04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     VOLCADRAFT_117128
DNA repair and recombination proteins [BR:vcn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      VOLCADRAFT_117128
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_EML WD40_CDC20-Fz Beta-prop_RIG_2nd Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 9618483
NCBI-ProteinID: XP_002949185
JGI: 117128
UniProt: D8TSD8
LinkDB
Position
Unknown
AA seq 555 aa
MPRVVKHNVPLDDDEEERIEESSTSEEEEDVIEEEESGDEEEEDDAREGANGSGDARVGS
KAGKTAQVTARASETAQATSGRQPGAPGRLTVSLSGKNEVCKVCGKRGHKAGFVGATYLD
CPNRPCYLCKGVGHTTATCPYRIAPGHGCTAAATAGDTATRGSVGGRGGCLGPGRNLCTA
LRSRECLGRCCALEFHPHNDSIVVSGDKKGALAVWNFDQVHDRTVYDTVHSCLTNSIRFL
PWLDSMSVVTASSDGTSKLVDLETGDWRPLLDLNPGGWVQGGPWHMIYGCDASPALGVVL
LHRKGNKVVSVHMHPLHPPLVLTAGNDHSARIFDIRELSSAPSAAAAVAGTPPQPPAAAA
AAAAAAARIAVAGGILSASPAAAAAAGRGGGNGGGRGGGGGGGATAGSSKKKGGSPTMCS
GSGPGAHAELVVMPHPRVVNSAYFSPHTGRRILTTCQDNRLRVWDYAPYGCNGPADREIV
HSHDFNRYLTPFRGEWDPKDLTESVFVVGRYISEDFGGVALHPVDVLSASDGGLLRQLTD
ANLTTISPVNKAHPR
NT seq 1667 nt   +upstreamnt  +downstreamnt
atgccgcgtgtagtgaagcacaatgttccgcttgacgatgacgaagaggagcgcatcgag
gagtcgagcactagtgaagaggaagaagatgtaatagaggaagaagaaagtggtgacgaa
gaggaagaggacgatgcgcgggaaggtgccaacggaagtggcgatgctcgcgtaggcagc
aaggcaggcaaaacagcgcaagttacagcacgggcatcggaaacagcgcaagctaccagc
ggtcgtcaacctggggcgccagggcgcctcacagtatctttgagcggcaaaaatgaggtt
tgcaaagtgtgcggcaagcggggccacaaggcggggttcgtgggtgccacctacctggac
tgccccaacaggccctgctacctttgtaagggggtggggcacacaaccgccacatgcccc
taccggatagcgccggggcacggctgtacggcagcggcgacggcgggggacacggcgacc
cgagggtcggtcggcggtagaggcggctgcctggggcccggccggaacctttgcacggcc
ctccgaagccgcgagtgccttggcaggtgctgcgcactggagttccaccctcacaacgac
agcattgtggtgagtggcgacaagaagggcgctctggccgtctggaacttcgaccaggtt
catgaccgtacagtgtacgacaccgtacattcctgtcttacgaactccatccgcttcctg
ccctggctggactccatgtccgtggtgacggcctcctcggacggcacctccaagctggtg
gacttggagacgggcgactggaggccgctgctggacctcaaccctgggggctgggtgcag
ggggggccctggcacatgatctacggctgcgatgccagccccgccctgggtgtcgtgctg
ctgcaccgcaagggcaacaaggtcgtctccgtccacatgcacccgctgcacccgccgctc
gtactaaccgccggcaacgaccactccgcgaggatattcgacatccgggagctatcctcg
gcgccgtcagcggcggcggcggtggcaggcacgccgccgcagcctccggcggcggcggct
gcagccgctgctgcagcggcccgtatcgccgttgcgggcggcattctgtctgcgtcaccg
gcggcggcggcggcggcagggcgtggcggcggcaacggaggaggacgcggcggcggcggc
ggaggcggtgccaccgctggcagcagcaagaagaagggcggctctccgaccatgtgcagt
ggcagcggtccgggtgcccatgccgagctggtggtgatgccgcacccccgggtggtcaac
tcggcgtacttcagcccgcacactggccgccgtatcctaacgacctgccaggataaccgt
ctgcgggtgtgggactacgcgccgtacggctgcaacggtcctgccgaccgagagatcgta
cactcgcacgatttcaaccgctacctgacgccgtttcgcggggagtgggaccccaaggac
ctcacggagtccgtgttcgtggtgggcaggtacatttcagaggacttcggcggtgtcgcc
ctgcacccagtggatgtgttgtcggccagcgacggggggctgctgagacagctgacagac
gccaacctgacaacaatatcgccagtaaataaggcccacccgagaag

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