Volvox carteri f. nagariensis: VOLCADRAFT_120230
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Entry
VOLCADRAFT_120230 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K10841
DNA excision repair protein ERCC-6
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VOLCADRAFT_120230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vcn03036
]
VOLCADRAFT_120230
03400 DNA repair and recombination proteins [BR:
vcn03400
]
VOLCADRAFT_120230
Chromosome and associated proteins [BR:
vcn03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
VOLCADRAFT_120230
DNA repair and recombination proteins [BR:
vcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
VOLCADRAFT_120230
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Ribosomal_S3_C
Helicase_C
KH_2
WHD_Rad26_CSB
ResIII
HDA2-3
WHD_SOWAH
AAA_34
Motif
Other DBs
NCBI-GeneID:
9625500
NCBI-ProteinID:
XP_002946233
JGI:
120230
UniProt:
D8TIE9
LinkDB
All DBs
Position
Unknown
AA seq
1596 aa
AA seq
DB search
MSPHGQQHQQQEGHQRPGLTLVETEKDRRIRLGLLTPFDRLAGFERKHRAAGFGSLRHLG
RPELRPEEAAALTRSGRPVGQVIAEAGRVALEARTSRRMAQFLEPEQLPQQERDVRRVPQ
HFWRQAASSHSAGGTSRLRRKSTLPRANTAEARAAARAARRAERRTVAAAAAAIGGSVAG
GDGSEGAGDGGGSDGIRRRENERRKGGRRREEEVGGEDEEGEREGEGQRRRRRRTTRSGQ
AAGGGEAGVHPGVAGGGGGGSGGDAEASASVTSSAESAGEGEDHSNFSDELADGGSSGSE
SYGGTSCSAAAADDDDEGDSEVGAAGDRGDPSSYDDSLYDDADEDFYQERLRRSRAAAAA
ASAGGGGGHGAMHSSAAAAAASGPPRQRRRRQRQRQTAGYAHLRNGDPDERQHEQHLGEG
PKVPAEEEEEEEEEEDVVFEGGFRVPSRLYGRLFDYQQTAVKWLWELHTQRAGGILGDEM
GLGKTVQVIAYLAGLHHSGLYRPSLIVCPATVLRQWMRELRSWWPPFRVVLLHESGRSPP
AAATAVRPDRPALLEVALSSPSGLVLTTYDNLRLQRDLLLRVRWGVAVLDEGHKIRNPDS
EITLVCKQLHTVHRLIMSGSPIQNRLSELWSLFDFIFPGKLGTLPVFQAQFAVPIQVGGY
SNASSLQVTTAYKCAVVLRDLTAPYLLRRRKADVAAQLPAKMEQVLFCTLVSEQLELYRA
YLASTEVGEILEGSRRALCGIDILRKICNHPDLLERVTAQDAEDYGNPARSGKLRVAERV
LTSWHTARQKALLFCQTQQMLDILEKLVAGRGWSYHRMDGGTPVAVRPRLIDDFNTNPDV
FVFLLTTKVGGLGVNLTGATRVMLYDPDWNPSTDIQARERAWRIGQSHSVTIYRLITAGT
IEEKIYHRQIYKSFLTNKVLRDPRQKRFFTARDISELFVLGPEYRKGASAAAAAAAGGDG
GGGTGSLVDTETARIFGATLDMQDALRGGGSGGGGGSGKNRKGLSSTAAAAAALRRRGER
DGEDGDGSGGGAATTAAPSGPGPGLSSRCPHQGPDGGSAQRAGWGRSSAAGQSAAAAAGG
GAYDAGDEDEVHDGGGGAEADESRVLRELLDGGAGIRGLVDHSKIEGANDPEVIAVHAEA
QRVAQRAAEALRRSRLACAAASIATPTWTGRHGRAGAPQLATAAAAPSPPWGGGTCRTQP
AQAQPRQQQQQQQQQQRGVESSAALLAQIRSRQQDIRSAAAAASRGADATAGASTSTSGR
SHGGGDCSSAGGTAAERLAGELVSFLEEHGGLVGSEELVEAFRSRVVSEQMPLFKQVLRQ
VAGLRRRAGGGEWVLKPAFATARVPAGLGGGEVASGVAQAQNLLAKMAVQISKKRKFVAD
GVFYAELNELLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQ
KRFNFPADSVELYAEKVLDRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGC
EVIVSGKLRAARAKSMKFKDGYMVSSGNPAKVYIDAAVRHVLLRQGVLGIKVKIMKDWDP
TGKRGPRTPLPDVVKVLEPKEEEIFQEKPHIGKEDM
NT seq
4791 nt
NT seq
+upstream
nt +downstream
nt
atgagtccacatggccagcaacaccagcagcaagaggggcaccagcggcccggtctaacg
cttgtggagaccgagaaggaccgccgcatccgcctgggcctcctcactcccttcgaccgc
ctggcgggattcgaacgcaagcaccgggctgctgggttcgggtcgctgcggcacctgggc
cgtccggagttgcggccagaggaggcggcggcgctgactcgcagcggcaggcccgtgggg
caggtgattgcggaggcgggccgcgtggcactggaggcacgtaccagtcggcggatggcg
cagtttctggagccggagcagttgccgcagcaggagcgggatgtgcgccgagtgcctcag
cacttttggcgccaggccgcgtcctcccatagcgccggcggtacctccagactcaggcgc
aagagcaccctgccgcgggccaacacggcggaggcacgggctgcggcgcgagcggcgcgg
agggcggaacgccgtactgtggcggcagcggcagcagccatcggcggcagcgtcgccggc
ggcgacggcagcgaaggggctggcgatggtggcggaagcgatgggatccgacgaagggaa
aatgaaagacggaagggggggagaaggagggaggaggaggtgggaggcgaggacgaggag
ggggaacgggagggggaggggcagcggcgacgtaggaggaggacgacgcggtcggggcag
gcggctggcggcggtgaagccggagtccatcctggggtcgccggcggcggtggcggcgga
agcggcggcgatgccgaggcctccgcctccgtcacctcttccgctgagagtgcgggtgag
ggcgaggaccactcgaacttctccgatgagctggctgacggcggctccagcggaagtgaa
tcgtacggcggcaccagctgcagcgccgccgccgccgacgacgacgacgaaggcgacagc
gaagttggagctgccggagaccggggagatccttcctcctatgatgattcactgtacgac
gacgctgacgaggacttttaccaggagcggctgcgccgcagccgcgctgcagcggcggcc
gccagcgcgggcgggggtggcgggcatggcgcgatgcattcttccgccgccgccgccgcc
gcctctggaccgccccgccagcggcggcggcggcagcggcagcggcagactgccggttat
gctcacctacgtaacggtgatccggacgagaggcagcacgagcagcatcttggtgagggc
cccaaggtgcccgcggaagaggaggaggaggaggaggaggaggaggacgtcgtgttcgag
ggcggcttccgtgttccgtcccggctgtacggcagactgttcgactaccagcagaccgcc
gtcaagtggttatgggagctccacacgcagagggcgggcggcatcctaggggacgagatg
gggctgggcaagacggttcaggtgatagcctacctggcaggtctgcaccacagcgggctc
taccggccctccctgatcgtgtgtcccgccaccgtcctccggcagtggatgcgggagctc
cggagctggtggccccccttccgagtggtgctgctgcacgagagcggcaggagcccgccg
gccgctgcgacggcggtgagaccggacagacccgcactgctagaagtggccctgagcagt
ccctccggactcgtactgaccacgtacgacaatctgcggctacagcgggacctgctactg
cgagtacggtggggagtggccgtactggacgagggacacaagatccggaacccggacagc
gaaatcaccctggtgtgcaaacagcttcacacggtccaccggctgatcatgagtggcagc
cccatacaaaaccggctgtcggagctctggtcgctgttcgacttcatattcccgggaaag
ctgggcacgttgcccgtgttccaggcgcagttcgcggtgcccatacaggtgggtggttac
tccaacgccagcagtctgcaggtgaccaccgcgtacaagtgcgctgtggtgctgagggac
ctcacggcgccgtacctgctgaggagacggaaggcggatgtcgcggcgcagctgcccgcc
aagatggaacaggtgctgttttgcacattggtttcggagcaactggagttgtaccgggcg
tacctggccagtaccgaggtgggtgagatcttggagggcagtcggagggccctatgcggt
atcgacatcctccgcaagatctgcaaccacccggacctgttggagcgagtgaccgcacaa
gatgcggaggattacggtaaccccgcccgctctggtaagctccgagtggcggagcgtgtg
ttgacctcctggcacacggcccgtcagaaggcgctgctgttctgtcagactcagcagatg
ttggacatcttggagaagctggtggcgggtcggggctggagctaccaccgcatggacggg
ggcacaccggtggcggtgcggccccggctgattgacgacttcaacaccaaccccgatgtg
ttcgtgttcctgctcacgactaaggtgggcggtctgggtgtcaacctgacaggcgccacc
cgggttatgttgtacgacccggactggaacccctccacggacatacaggcccgcgaacgt
gcctggcgtatcgggcagtcccattccgtgaccatctaccggctcatcacggcaggcacc
atcgaggagaagatctaccaccgccagatttacaagagcttccttacgaacaaggtgctc
cgagacccgcgccagaagcgcttcttcaccgccagggacatctccgagctcttcgtgctg
ggacccgagtacaggaagggcgcctcagcggcggcggcggcggcagcggggggtgatggt
ggcggcggtacgggtagcctggtcgacacggagacagcccgcattttcggagctactctg
gatatgcaggacgcgctgcgaggaggcggcagtggcggtggcggcggcagtggcaaaaat
aggaagggcctgtcgtccacagcggcagcggcggcggcgctgcgccgccgcggcgaacgt
gacggcgaagacggcgacggcagcggcggcggcgccgccaccaccgctgcgcccagtggc
ccaggcccaggtctcagcagtcgctgcccacatcagggccccgatgggggctcagcgcag
cgagccggctggggtaggagcagcgcggctgggcagtccgcggcggcggcggccggtggc
ggagcctacgacgccggtgacgaggacgaggtgcatgacggcggtggcggtgcggaggcg
gacgagtcccgggtcctgcgggaacttctagacggcggcgcgggtatccgcggcctggtg
gaccactccaagatcgagggcgccaatgatcccgaagtcattgccgtacatgcggaggcg
cagcgtgtggcgcagcgggccgcagaggcgttacgtcgctcccgcctcgcctgcgccgcc
gcctccatcgccacgcccacatggacgggacgccacggccgcgcgggggcaccgcagttg
gcgacggccgcggcggcgccgtcgcctccctggggcggcggaacctgccgcactcaaccg
gctcaggcgcagccgcgccagcagcagcagcagcagcagcagcagcagcggggggttgag
tcatccgcagcgctgctggcgcaaatccgtagccgccaacaggacataagaagcgccgcg
gcggcggcaagccgcggcgccgacgccactgcaggcgcgtcgaccagcaccagtggtcgc
agccacggcggtggcgactgctcctccgctggcggaacggcagctgagcgactcgctggc
gagctggtgtcgttcctggaggagcacgggggcctggtgggtagtgaggagctagtggag
gcgtttcggtcacgggtggtttcggagcaaatgccgctgttcaagcaggtgctgcgccag
gtggcaggactgcggcggcgggctggcggcggcgaatgggtgctgaagccagcatttgcc
acggcgcgggtgccggcggggcttggcggcggggaggtagcctctggtgtcgcacaggcg
cagaacctgttggcaaagatggccgtgcaaatcagcaagaagcggaagtttgttgcggat
ggcgtcttctacgccgagctgaatgagctgcttactcgggagctggctgaggatggctac
agcggtgtggaggtccgcgtgactcccatgcgcacggaaatcattatccgtgccactcgc
acgcagaacgtcctgggcgagaagggccgccgcattcgggagctgacatcggtggtgcag
aagcgcttcaacttcccagccgatagcgtggagctttatgctgagaaggttctggatcgt
gggctgtgcgcagttgcgcaggccgagtcgctgcgctacaagctgcttggcggcttggcc
gtccgccgggcgtgctacggcgtgctgcgcttcgtgatggagagcggtgccaagggctgt
gaggttattgtctccggcaagctgcgggccgctcgtgccaagagcatgaagttcaaggac
ggctacatggttagcagcggcaacccagccaaggtttatatcgacgccgctgttcgccac
gttcttctgcgccagggtgtcctgggaattaaggtcaagatcatgaaggactgggacccg
accggaaagcgtggcccgcgcactccgctgcccgatgttgttaaggtgctggagccgaag
gaggaggagatcttccaggagaagccgcacattggcaaggaggacatgtaa
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integrated database retrieval system