Volvox carteri f. nagariensis: VOLCADRAFT_30109
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Entry
VOLCADRAFT_30109 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
vcn
Volvox carteri f. nagariensis
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcn03400
]
VOLCADRAFT_30109
Enzymes [BR:
vcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VOLCADRAFT_30109
DNA repair and recombination proteins [BR:
vcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
VOLCADRAFT_30109
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
9617023
NCBI-ProteinID:
XP_002954008
JGI:
30109
UniProt:
D8U5P9
LinkDB
All DBs
Position
Unknown
AA seq
1405 aa
AA seq
DB search
LPPLPQLAFPGYKTLNRIQSRIFRTAYHSNENILVCAPTGAGKTNIAMIAVLREIGANMR
HGVIQKADFKIVYVAPMKALAAEVTANFAKRLEPLGLLVRELTGDMQLTKRELAETQMIV
TTPEKWDVITRKVCLSVCMSISVCMSVCMSVCMPVCMPVCMSHGQVLSLVIVERGGLPFG
FLWFLSPSLSILPSISPPTHISYPISQPPQYSSPTPYTNIWFLHSPSPLPPPKMVESLKA
GYQVMVFVHSRKDTGKTARVLADLAAKSGDAGLLDTREHDKYGIFAKDVRKSRYMAELFD
LGFGMHHAGMLRPDRTLTERLFAEGLLRVLVCTATLEWGVNLPAHTVIIKGTQVYDAQKG
GFTDVGMLDVQQIFGRAGRPQFEDSGECLGIILTTHDKLAHYLGMLTHQAPIESQFKKYL
VDNLNAEIVLGTVTNVREAVAWLGYSYLARRLERNPLVYGITYDQLVLDPGLELHKRDLV
VEAAKSLRESQMAVYDERSGALYVTELGRVASHFYIKAASMVTFNSLLKPHMKEDKVLAM
VAQSAEFEQLVLREEELPELDEMARNVPYPVKGLGGNDNKSGKANVLMQVVVRGRGFVCV
GRKWSSMADTCLTLAKSLELRLWAHNHPLRQFEGTPGLGAELLGKLEDRQVGAGACESVL
VPNPVKIYNFDKKYNLQSTLKPPPRTLTKPHSRACPLSPIIPCLKIRIQIQVQIQIQDLD
AGFFTRVPKNFGRVRNPLINLSGPSPKSFLLKKVRARIGVKNPASMAFFSGFPPLPPCCP
LLPFLVSELLDLDPLPLAALRHPAYEALYGGRFTHFNPIQTQAFHTLYHTDENVLLGAPT
GSGKTISSELTMMRLWSAHPGHKVIYVAPLKALVRERMSDWGARLCPLLGKKMVELTGDY
TPDLRALLAADIIICTPEKWDGISRAWQTRGYVKKVWGASARERVRVRGRGCECECEGGG
ASAREGVRVRGRGCECEGGGAGADLADWLGIGPAGLFNFKPSVRPVPLECHIQGFPGKFY
CPRMASMNKPAYAAIQARSGRGGRPPVHSPTKPVLVFVSSRRQTRLTALDLITYAVADER
PQQFLRMSESELEGCLVGVKDAALRHCLQFGIGLHHAGLGDKDRGLVERLFVECKIQVLV
ATSTLAWGVNTPAHLVIIKGTEYYDAPGGRYVDFPITDVLQMMGRAGRPQFDRHGVAVIM
VHEPKKQFYKRFLYEPFPVESSLQDQVADHFNAEIVAGTIRSRQDAVDYLTWTYFFRRLL
QNPTYYDLQGTDSDSVNTYMSRLVATALGQLEEAGCVTLGDDTDGGDGGGGEEVAPSAVS
PTPLGRIASFYYLQHKTMSQLGGSMGPGMGVQELLQALCSVSEFDDLPVRHNEDKINAAM
CRGVRFPPDSRTADDPHTKANLLLQ
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
cttcccccccttcctcagctcgcctttcccggctacaagacactcaaccgcattcagagc
cgcatcttccgaaccgcctaccactctaacgagaatattctggtgtgcgccccgaccggt
gccggcaaaaccaacattgccatgatcgcggtgctccgggagatcggcgccaacatgcgg
cacggggtcatccagaaggcggacttcaagatcgtgtacgtggcgcccatgaaggctctg
gcagccgaggtaacagccaacttcgccaagagactggagcctctaggtctgctggtccgc
gagctcacgggcgacatgcagctcacgaaacgggagctcgcggaaacgcaaatgatcgtc
accacaccggagaaatgggacgtcatcacacgcaaggtctgcctgtctgtatgtatgtct
atatctgtctgtatgtctgtctgtatgtctgtctgtatgcctgtctgtatgcctgtctgt
atgtctcatgggcaggtgttgagtttggtgatagtggagcgtgggggtttacctttcggt
tttttgtggtttctttctccctccctctccatcttgccctccatctccccccccacacac
atttcctaccccatctcgcaaccccctcaatattcgtcccccaccccctacacaaacatc
tggttcctgcattccccctcccccctcccccccccaaagatggtcgagagtctcaaggcg
ggctaccaagtgatggtgttcgtacacagccgcaaggacacgggtaagacggcccgggtg
ctggctgacctggcggccaagagcggcgacgcggggctgctggacacgagggaacacgac
aagtacggcatcttcgcaaaggatgtacggaagagcaggtacatggcggagttgttcgat
ttgggtttcggcatgcaccacgcgggtatgctgcggcccgaccggaccctcacggaaagg
ctgtttgcggaggggctgctgcgggttttggtgtgtacggccaccctcgagtggggcgtg
aacctgccggcacacaccgtcatcatcaagggcacgcaggtgtacgacgcacagaagggt
ggtttcacggatgtgggcatgctggacgtgcagcagatttttggacgagcgggccgcccg
caattcgaggacagcggtgagtgtctgggcatcatcctgacgacccacgacaagctggcc
cactacctgggtatgctgacccaccaggcgcccatcgagagccagttcaaaaagtacctg
gtcgataacttaaatgcagagattgtgctgggtacggtcaccaacgtgcgtgaggcggtg
gcctggctggggtactcctacctggcgcgtaggctggagcgaaacccgctggtgtacggc
attacgtacgaccagctcgtactggaccccggcttagaactccacaaacgtgacctggtg
gttgaggccgccaagtcgcttcgggagtcccagatggctgtgtacgacgagcggtcgggc
gccctgtacgtcactgagctgggtcgtgtggcctcccacttctacatcaaggctgcctcc
atggttaccttcaactcgctgctgaagccgcacatgaaggaggacaaggtgctggccatg
gtggcgcagagcgccgagttcgaacagctcgtgctacgggaggaggagctgccggagctg
gacgagatggctcggaatgtgccgtaccctgtcaaagggctgggcggcaacgacaacaag
tctggcaaggccaacgtgctgatgcaggtggtagtgcgggggagggggtttgtgtgtgtg
ggacgcaagtggagcagcatggcggacacctgtctcactctggccaagtcgctggagctc
aggttgtgggcacacaaccacccgctccggcagttcgaggggacgccgggactgggagcc
gagctgctggggaagctggaggataggcaggtgggagcgggtgcgtgtgagagtgtgtta
gtgccaaaccctgttaagatatataattttgacaaaaaatacaatttgcaaagcacccta
aaaccccctccccgtaccctaactaagccacattcacgtgcttgtcctctttcccccatc
atcccctgtctcaagatcaggatccagatccaggtccagattcaaatccaggaccttgat
gcagggttcttcaccagggtacccaaaaatttcggccgtgtccgaaaccctctgattaac
ctttcggggccctccccgaaaagtttccttctcaaaaaagttcgggcccgaatcggggtg
aagaaccctgcctcgatggctttcttctcagggtttccccccctccctccctgctgcccc
ctcctcccctttttggtttcagagctcctggatttggatccgctccccctggccgccctg
cgccaccccgcctacgaggcgctgtacggcggccgcttcacgcacttcaaccccatccaa
acccaggccttccacacgttgtaccacacggacgagaatgtgctgctgggggcacccacc
gggtcgggtaagaccatcagcagcgagctgaccatgatgcggctgtggagcgcccacccg
ggtcacaaggtcatctacgtggccccgctcaaggcgctggtgagggagaggatgagcgac
tggggggccagattgtgtccgctgctgggcaagaagatggtggagctgacaggcgattac
acacctgatctgcgggcgctgctggcggcggacatcatcatctgcactccggagaagtgg
gatggcatatcccgggcctggcagacacgaggatacgtcaagaaggtgtggggtgcgagt
gcgagggagagggtgcgagtgcgagggagggggtgcgagtgcgagtgcgagggagggggt
gcgagtgcgagggagggggtgcgagtgcgagggagggggtgcgagtgcgagggaggggga
gcgggagctgacctggcggattggctgggtatcggacccgcgggtctgttcaacttcaag
ccctccgtacgacctgttcccctggagtgccacatccaaggcttcccgggcaagttctac
tgccccagaatggcgtccatgaacaaacccgcgtatgcagcaatacaggcgaggtcgggg
cgggggggaaggccgccagtccactcacccaccaagcccgtgcttgtgttcgtgtcatcc
cgccggcaaactcgcttgaccgcgctggatctcatcacgtacgcagtggctgacgagcgg
ccccagcagttcctgcgcatgtcggagtcggagttggagggctgtctggtcggggtgaag
gacgcggcgctgcggcactgccttcagttcggtatcggactgcaccacgcgggtctgggg
gataaggacaggggcctcgtggagcggctgtttgtggagtgtaaaatccaggttcttgtg
gccacctccaccctggcctggggtgtcaacacccccgcgcacctggtcatcatcaagggc
accgagtactacgacgcgcccggcgggagatacgtggacttccccatcacggatgtactg
cagatgatgggtcgcgcgggtcggccccagttcgaccggcacggggtggctgtgatcatg
gtgcacgaacccaagaagcagttctacaagcgcttcctgtacgaaccctttcccgtggag
tccagtctgcaggaccaggtggccgaccacttcaacgccgagatcgtggcgggcaccatc
cgcagccgccaggacgcagtggactacctgacctggacgtacttcttccggcggctgctg
cagaaccccacctattacgacctgcagggcaccgactcggactccgtgaacacctacatg
agccggctggtggccacggccctggggcagctagaggaggcggggtgtgtgacgttgggg
gacgatacggacggaggtgacggcggcggcggtgaggaggtggcgccctccgccgtcagc
cccaccccactgggccgcatcgcctccttctactacctgcagcataagaccatgagccag
ctgggtggcagcatgggacccggcatgggggtgcaggagctgctgcaggccctttgctcg
gtgtctgagtttgacgatctgccggttcgccacaacgaggacaagatcaacgcggccatg
tgccgcggggtgaggttccccccggatagtcgtacggcagatgacccgcacaccaaggcg
aatctgctgctgcag
DBGET
integrated database retrieval system
