Volvox carteri f. nagariensis: VOLCADRAFT_40179
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Entry
VOLCADRAFT_40179 CDS
T01330
Symbol
ddb1
Name
(RefSeq) UV-damaged DNA binding complex subunit 1 protein
KO
K10610
DNA damage-binding protein 1
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03420
Nucleotide excision repair
vcn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
VOLCADRAFT_40179 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
VOLCADRAFT_40179 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vcn04121
]
VOLCADRAFT_40179 (ddb1)
03400 DNA repair and recombination proteins [BR:
vcn03400
]
VOLCADRAFT_40179 (ddb1)
Ubiquitin system [BR:
vcn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
VOLCADRAFT_40179 (ddb1)
DNA repair and recombination proteins [BR:
vcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
VOLCADRAFT_40179 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
VOLCADRAFT_40179 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
9619382
NCBI-ProteinID:
XP_002950181
JGI:
40179
UniProt:
D8TUM0
LinkDB
All DBs
Position
Unknown
AA seq
1104 aa
AA seq
DB search
FNYVVTAHKPTAVTHAVVASFTGPNDVNLITACSTRLEIRTLGPQGLSAVLDVPIYGNIS
ALQVFRPRDLHADLLFILTEKYKFCVLQYDAAKGQLLTRANGDVADRIGRPAENGQLGVV
DPACRLIGLHLYDGMLKVIPMDDRSGQLSEAFSVRLEELSVLDMAWLHPQPPGGGGGGGS
PGRPLLCVLHQDPKGARHVKTYEMQLGANDLLDGPWQQQHVDSGAALLIPVPSPLGGVVV
VGENVVSYLGGPGGQAPVSAPLRQTIVTAWCPVDPDGSRFLLGNRQGGMQLLVLAHDGSR
VSGLRTEPLGYTCAPSCLAYLDSGLTFVGSRSGDSQLVRISAQPVNQPPTYLELVDSFPS
LAPIVDFVVMDLERQGQGQLVMCSGIDSDGSLRVVRNGIGINRQATVELPGIKGVWSLRS
HYDDEYDKYLLLTFVGETRLLALNTEEELDEAELPGFDSGSQTLWCGNMATDHLLQASGS
SVRLVDTASLQLVSEWRPAPGFAIHVAAGSPTQVVVATGGGHLVYLEVVRRPEGVVEVVE
ISNVVLDSEVACVDVSPLMLQQQPLAGEWPGGRSSVVAVGRWDQTMQLLSVPSLAPLSST
PLGGEVIPRSVLCTALEGVPYCMVGLGDGALHTWRLDPATGGLSDKKRLVLGTKPIMLRT
FRTAAAVSGGGGGSLRGSGGGHGGVSVFAASDRPTVVYSSNKKLLYSNLNENDVAFLASF
HSAAFPRSLAVASEGALTIGTADEIQKLHVRAVPLGENPRRIAHHEGARMLGVLTMRLDS
DGSERSFLRLLDDTTFDVVASYALAPGEMPCSLAAWPGSSNGTAAVGALNACFLVGTAFI
VPEEPEPTKGRILVLEHVRLVTEKEVKGAAYNVLPFVKDKILASVNSKVPASGCDLGGVR
VELASECSYLGNILALYLATRGNLVVVGDLMRSVSLLSYNVEQGVLEHRAADYNSGWTTS
VEALDDDTYLEGDNHLNLVVLRRNADSATDEERARLQVVGEYHTGTFVNRFRHGSLVMRP
PDSEFVSLPVPLLFGGTDGRLGVIARLPPGLYEMLTKLQSALRQVVRGVGGLSHEAWIAF
SNERRTADAKGFVDGDLIETFLDL
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
tttaattacgtggttaccgctcacaagcccacggcggtgacacatgctgtggtggcgagc
ttcacagggcccaacgatgtaaatcttataacagcttgctctacacgccttgagatccgc
acgctggggccgcaggggctgtcggccgttctagacgtgcccatctacggcaatatcagc
gccctgcaggtctttcgaccccgggaccttcatgcggacttgcttttcatcctgacggaa
aagtacaagttttgtgtactgcagtacgacgcagccaaaggtcagcttttgacccgtgcc
aatggtgacgtggcggaccgcattggtcgtcccgctgaaaacgggcaactgggagtggtg
gacccggcatgtcgcctcatcgggctacacttgtacgacggaatgctcaaggtcattccc
atggacgaccgaagcggccagctgtccgaggccttcagtgtgcggctagaggagctgtcc
gtgctggacatggcctggctgcacccgcagcccccgggcggtggcggtggtggtgggtcc
ccgggccggccgctgctgtgtgtcctgcaccaggaccccaaaggtgcccgccacgtcaag
acctacgagatgcagctgggggctaatgacctcttagacggtccctggcaacagcagcat
gtcgacagcggcgcggcgctgctcatacccgtaccctcgccactggggggtgtggtagtt
gtgggcgagaatgtggtgtcgtacctgggaggcccggggggccaggcgcccgtgtcagcg
ccactgaggcaaaccatcgtcacggcctggtgtccggtggacccggatggctctcgcttc
ctgctggggaaccgtcaggggggcatgcagctgctggtgctagcacacgacgggagcagg
gtcagcggacttagaactgagccgctcggctacacctgcgccccttcctgcctagcctac
ttggacagcggactcacattcgtggggagcaggtccggggactcgcagctggtgcgcatt
tccgcacagccagtaaaccagccgcccacctacttggagctggtagacagctttcccagc
ctggcgcccatcgtggactttgttgtgatggaccttgagagacagggccagggccagttg
gtcatgtgcagtggcatcgacagcgacggcagtttgcgggtggttcgcaacggtatcggg
atcaaccgccaggccactgtggagcttcctggaatcaagggggtgtggagtctgcgctcc
cactacgacgacgagtacgacaagtaccttctgctgaccttcgtgggggagacccgcctg
ctggcgctcaacacggaggaggaactcgacgaggcggaactgcccggtttcgacagcggc
tcccaaaccctgtggtgcggcaacatggccaccgaccacctgcttcaggcaagtggctcc
agtgtacggctggtggatacggcatccctgcagctggtttcggagtggcggcctgcaccc
ggattcgccatccacgtggctgctggcagccccacgcaggtcgttgtggccacgggcggc
ggccatctggtatatctggaggttgtacggcggcccgagggggtggttgaggtggttgag
atttccaacgtggtcttagattccgaggtggcgtgtgtggacgtatcgcccttgatgctg
cagcagcagcctttggcaggcgagtggccgggtgggcggtcgtccgtggtggcggttggt
cgttgggaccagacgatgcaactgctgtcggtaccctccctggcgccgctgtcttccacg
ccgctgggtggagaggtcattccacgctccgtgctctgtacggcgctcgagggtgtgccg
tactgcatggtcgggctgggtgatggcgccctgcacacctggcggctggatcccgcgact
ggaggcctgtccgacaagaaacggttggtgctggggaccaagccgatcatgctccgtact
ttccgtacggcggcggcggttagtggaggcggcgggggcagcttgaggggcagcggtggc
ggccacggcggcgtgagcgtcttcgctgcaagcgaccggccgaccgttgtttactcgtcc
aacaagaagctgttgtacagcaatcttaacgagaatgacgttgccttcctggcctccttc
cactcggcggccttccctcgtagcctggcagtggcgtcagagggcgcactcaccatcggc
accgcggacgagattcagaagctgcacgtgcgagctgtcccgctgggggagaacccccgc
cgtatcgcccaccacgagggggccaggatgctgggcgtgctgaccatgaggctggacagt
gacggcagcgaacgcagcttcctgcgtctgctggacgacacgacgttcgacgtcgtggca
tcgtacgcgctggcgcccggcgagatgccgtgcagtctggcggcctggcctgggagttcg
aacgggacggctgccgtgggcgccttgaacgcgtgttttctcgtgggtacggcatttatc
gtaccggaggagccggagcccacgaaaggccgcattctggttctggagcacgtgcgcctt
gtcaccgagaaggaggtcaagggagccgcgtacaacgtgctccctttcgtcaaggacaag
atcttagcctccgtcaacagcaaggtgcccgcatccgggtgtgatttgggtggtgtccgg
gtggagctggcttctgagtgctcctatctaggcaacatcctggcgctgtacctagccaca
cgcggcaacctcgtggtggtgggcgacttgatgcgctccgtatcccttctgtcgtacaat
gtggagcagggggttctggagcaccgtgcggctgactacaacagcggatggaccacctca
gtggaggccctggacgacgacacctaccttgagggggacaaccacctcaatttggtggtg
ctccgccggaatgcggactccgccacggacgaggagcgggcgaggttgcaggtggttggc
gagtaccatacaggcacctttgtcaaccgcttccggcacggctctctggtgatgcggccg
cctgatagcgagttcgtctccctgcccgtaccgctgttgtttgggggtacggatggccga
cttggcgtcattgcacgactgccgccggggttgtacgaaatgctgactaagcttcagtcg
gcactgcggcaggtggtgcgaggtgtgggcggtctgagtcatgaggcctggatcgccttc
tccaacgaacgacgtacggcggacgcgaagggcttcgttgacggcgacctcattgagacg
ttcctggaccta
DBGET
integrated database retrieval system
