KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_41344
Entry
VOLCADRAFT_41344  CDS       T01330                                 
Name
(RefSeq) ubiquitin-specific protease 39
  KO
K12847  U4/U6.U5 tri-snRNP-associated protein 2
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VOLCADRAFT_41344
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vcn03041]
    VOLCADRAFT_41344
Spliceosome [BR:vcn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    VOLCADRAFT_41344
SSDB
Motif
Pfam: UCH zf-UBP UCH_1
Other DBs
NCBI-GeneID: 9617875
NCBI-ProteinID: XP_002946481
JGI: 41344
UniProt: D8TJP6
LinkDB
Position
Unknown
AA seq 474 aa
DEDDDDDDEGADDRVLLPRSTSRAAVKKGTECPYLDTISRQNLDFDFEKCCSVTLSPVNV
YVCLVCGKYFQGRGLNTHAYTHSLESAHHMFMKLDNGKVYCLPDNYEVLDKSLDDIRHVR
DPLFRTEEIASLDNSSSISRLLSYMPGLVGLNNMKNNDYINVIMQICARITPLRDFFLDP
ANYSDCRSPLVQRFGELLRKMWNTRNFKGQVSPHEFVQAVRNASKKRFTADTQCDPVELW
SWLLNNLHLDLTRGKPKKPSIITQCLQGELEVTTLAGTGRGTRAATSGEDVTERVPFLLL
GLELPPAPLFKDVLEKNIIPQVPIFHIMRKFDGETITDDIRAGRRRFRITRLPRYLALHY
RRFTKNNFFIEKNPTLVNFPVKSLELRDILPLPEFPAAAGGAAAGAPDAAAYGSSSKYDL
VANLVHDGKADSGTYRVHVHRKVEDIWYEVQDLAVQDILPQMVALSEAYFQVFE
NT seq 1422 nt   +upstreamnt  +downstreamnt
gacgaggacgacgacgatgacgatgaaggtgcggatgaccgtgtgctgctgccccgcagc
accagtcgtgcggcagtcaagaagggcactgagtgcccctacctggacaccatctcccgc
cagaatttggacttcgattttgagaagtgctgctcggtgactctcagtccggtcaacgtg
tacgtgtgcctggtgtgtgggaagtacttccagggtcgcggtctgaacacccacgcctac
acgcactcgctggagtccgctcaccacatgttcatgaagctggataacggcaaggtgtat
tgcctgccggacaactacgaggtactggataagtcgttggacgacattcgccacgtgcgg
gaccccctgttccgtacggaggagattgccagtctggacaacagtagcagtattagtagg
ctgctctcgtacatgccggggttggtggggctcaacaacatgaagaacaacgactacatc
aacgtcatcatgcagatctgcgcccgcatcactccgctcagggacttcttcctggacccc
gcgaactactcggactgccgcagccccctggtgcagcggtttggagagctgctgcggaag
atgtggaacaccaggaacttcaaaggccaggtctccccgcacgagttcgtacaggcggta
cggaacgcttccaagaagcgatttacggccgatacgcagtgcgaccccgtggagctctgg
tcctggctgctcaacaatctgcatctggacctgacgaggggcaagcccaagaagccgtcc
atcataacgcagtgcctgcagggggagctggaggtgaccacgctggcgggtacgggtagg
ggcacccgggcggccacgagtggggaggacgtcaccgagcgagtgcccttccttctgctg
ggactggagctgccgccggcccccctgttcaaggacgtgctagagaagaacatcatcccg
caggtgcctatcttccacatcatgcgcaaatttgacggcgagaccatcaccgacgacatc
cgggccggccgccgccgcttccgcattacccgcctgcctcgctacctggccctccactac
cgccggtttaccaagaacaacttcttcattgagaagaaccccaccctggtcaatttcccc
gtcaagtctctggagctacgggacatattgccgctgccggagttccccgctgcagcaggc
ggtgcggcggcaggcgcaccggacgcagccgcgtacggcagctcgtccaagtacgacctg
gtagctaacctggtccatgacggcaaggccgacagcggcacctaccgggttcacgtccac
cgcaaagtagaggacatctggtacgaggtgcaggacctggcggtgcaggacatcctacca
cagatggtggcgctatcagaggcgtactttcaagtcttcgaa

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