Volvox carteri f. nagariensis: VOLCADRAFT_62457
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Entry
VOLCADRAFT_62457 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K12855
pre-mRNA-processing factor 6
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VOLCADRAFT_62457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcn03041
]
VOLCADRAFT_62457
Spliceosome [BR:
vcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
VOLCADRAFT_62457
Complex C
U5 SnRNP specific factors
VOLCADRAFT_62457
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
TPR_19
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_16
HAT_Syf1_CNRKL1_C
CP12
APG6_N
TPR_CcmH_CycH
Motif
Other DBs
NCBI-GeneID:
9628707
NCBI-ProteinID:
XP_002952457
JGI:
62457
UniProt:
D8U1A5
LinkDB
All DBs
Position
Unknown
AA seq
914 aa
AA seq
DB search
MTREDTLPTRPMPKAPTTKVDFNSLKAPSGYVPGLGRGAAGFTTRSDIGPARAGGLDALK
GGNPSSPLSFPFRKAPGSKAGGDNEEALDDTKFDEFMGNDAGVFAATGEYDEDDKEADAV
WETVDNFMDERRREAREKRLKEELERYRAENPKITEQFADLKRKLTEVSYEEWESIPEIG
DYTIKKQRRMERFAPVPDSLLARAAAEAASASAAGGSLAKSLDPNSGLASVGGGLNGLAT
PMGGATSTVSDLTAIGTGRGTVLGLKLDRMADSVTGQTVVDPKGYLTDLKSIKISTDAEI
SDIKKARHLLKSVIQTNPRHAPGWIAAARLEEVAGKLADARKLIMQGCELCPNSEDIWLE
AARLQTPDNAKALLARGVAQLPESTKLWMAAAKLETDDTAKARVLRKALERIPTSVRLWK
AAVELAEEDDARILLSRAVECCPQAVELWLALARLETYENARKVLNNARKAVPTEPAIWI
TAAKLEEANGAEQGQVDKIVARAIKSLSTNGVVIHRDAWMKEAENAERSTPAPHVLTCRA
IVRTVYSLGVDAADLEATLVADAEDAAKRGSVETARALYSQALTTFPSQPHIWRQAAQLE
KGHGSRAQLDELLRRAVQFCPQAEVLWLMAAKEAWLGGDVDGSRAILARAFAANPDSEQI
WLAAFKLEFENNEPERARALLAKARENEAASSYPRVWMKSAIVERELGDAGKERALLEEG
IRRFPTFEKFYLMLGQLEQRCGSTDGARVVYRWGREGGTEGGGRGTICQVGMGKEERLGA
PSWRGRRRNGPNRKEGGVLKSTGGLGSLLLMLLSPPHPPSPRFVVPQVEKARSWFNRAVT
LNPDIGDHWAHFYKFECQFGTPEQQADVSSRCAAAEPHHGERWCRVSKDPRNAHQPVEVL
LRRTVQDLDSLPPP
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgtgaggacacccttccgactcggccgatgccaaaggcccccaccaccaaggtg
gatttcaacagccttaaggcaccgagcggctacgtcccaggtctaggccgtggtgcagca
ggtttcacgacgcgatcagatatcggtcctgctcgggcgggcggcttggacgctttgaaa
ggagggaacccctcttcccccctctcctttccctttcgcaaggcccccggctcgaaggct
ggaggtgacaatgaggaggcgctggatgacaccaagttcgatgagttcatgggtaacgac
gcgggtgtgttcgcggccacgggggagtacgacgaggacgataaggaggcggacgcggtg
tgggaaacggtggacaacttcatggacgagcggcgaagggaggctcgtgagaagcggctc
aaggaggagttggagcggtaccgggcggaaaatcccaagattacggaacagttcgccgac
ctgaagagaaagctgactgaggtgtcgtacgaggagtgggagtccatccccgagatcggc
gactacaccatcaaaaaacagcgccgcatggagcggttcgcgcccgtccccgactccctg
ctcgctcgcgccgcagcggaggccgccagcgcctcagcggccgggggcagtctggccaag
tccctggaccccaacagcggcctggcctccgtgggtggcggtctgaatggactggcgacc
cccatggggggcgccacatccaccgtgtcagatctgaccgccattggtacgggtcgtggc
actgtgttgggtctgaaactggaccgcatggctgactccgtgacgggtcagacggtggtg
gatcccaagggctacctcacggatctcaaatccatcaagatcagtacggacgccgagatc
tccgacatcaagaaggccaggcacctgctcaagtcggtcatccagaccaacccgcgacat
gcgccggggtggattgcggcggcaaggcttgaggaggtggcgggcaagctggcggatgcg
cgcaagctcatcatgcagggctgtgagctgtgccccaacagcgaggacatatggctggag
gcggccaggctgcagacccccgacaacgccaaggccctgttggcccgcggcgtggctcaa
ctgcccgagagcaccaagctgtggatggcggccgccaagctggagaccgacgacacggcc
aaagcacgagtgctcagaaaggccctggagcgcatccccaccagtgtccggttgtggaag
gcggcggtggagctggcggaagaggacgatgcgcgcatcctgctgagccgggcagtggag
tgctgtccgcaggcggtggagctgtggcttgcgctggcgagactggagacctacgagaac
gcgcgcaaggttctcaacaacgcccgcaaggccgtacccacggagcccgccatctggatc
accgccgccaagctggaggaggccaacggcgcggagcagggccaggtggataagatcgtg
gcgcgagccatcaagagcctgtccaccaacggagtggtcatccacagagacgcctggatg
aaggaggcggagaatgcggagcgcagtacccccgcgccgcacgtgctgacctgccgggcc
attgtgcgaacggtgtactcgctgggggtggatgcggcggatctggaggccacgttggtg
gctgatgcggaggatgcggccaagaggggcagtgtggagacggccagggcgctgtatagc
caggcgctgaccacctttccgtcccagccacacatctggcggcaagccgcccagttggag
aaggggcacggcagccgggcacagttggacgagctactacggcgcgccgtacagttctgt
ccccaggcagaagtcctatggctcatggcggccaaggaggcctggctgggcggggatgtg
gacggctcacgtgccatcctggcgcgagcttttgctgccaatccggattcggagcagatt
tggttggcggcgttcaagctggagtttgagaacaacgagccggagcgcgctcgtgcgctg
ctggccaaggcgcgtgagaacgaggctgccagcagctacccccgcgtgtggatgaagtcg
gccattgtggagcgggagctgggcgacgcgggcaaggagagggcgctgctggaggagggc
atccggcggttccccacctttgaaaagttctacttgatgttggggcagctggagcagcgg
tgcggcagcacagatggggcgagagtggtgtacaggtggggcagggaagggggaacggag
ggagggggtaggggaaccatatgccaggtggggatggggaaagaggaaaggctgggggcc
ccgtcctggcggggtcggcggcgtaatgggccgaatcggaaggagggcggcgtcctcaag
agtacgggcggattgggttcgttgctgttgatgctgttgtctccaccccatcccccgtca
ccccgttttgtggtcccgcaggttgagaaggctcggtcctggttcaatcgggcggtgacc
ctcaatcccgacattggcgaccactgggcgcacttctacaagttcgagtgccagttcgga
acaccggaacagcaggcggacgtgtcatcccggtgtgcggctgccgagccccaccacggg
gagcgctggtgccgagtgtccaaggaccctcgtaacgcccaccagcctgtggaggtgctc
ctgcggaggaccgtacaggacctggactccctgccaccgccctga
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