KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_65424
Entry
VOLCADRAFT_65424  CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K14962  COMPASS component SWD2
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    VOLCADRAFT_65424
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcn03019]
    VOLCADRAFT_65424
   03036 Chromosome and associated proteins [BR:vcn03036]
    VOLCADRAFT_65424
Messenger RNA biogenesis [BR:vcn03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     VOLCADRAFT_65424
Chromosome and associated proteins [BR:vcn03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     VOLCADRAFT_65424
    COMPASS/SET1 complex (yeast)
     VOLCADRAFT_65424
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I WDR55 ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_Nup120_160 Beta-prop_WDR75_1st Beta-prop_NOL10_N WD40_RFWD3 Beta-prop_SPT8 MIOS_WD40 WD_LRWD1 ADI VID27
Other DBs
NCBI-GeneID: 9621755
NCBI-ProteinID: XP_002955013
JGI: 65424
UniProt: D8U8L0
LinkDB
Position
Unknown
AA seq 326 aa
MGQQLALDDRVLRSMGVGKCFKDGHQRINSMDFCRTEDLLVTGSDDDSIRVYDVARGVPV
DTLHSRKYGVQNVCFTHDPACIVYASRKLKPTEAHALRYHSLHMNQYLRYFTGHTAQVCV
NSLCFSPKNDTFVSAAQDKTVRLWDVRTNICQGCLQVPGNPTATIDQQGLVFAVATESGI
IKLYDLRSYDKGPFDTFTEKGNPTGFADIKFSNNGNLLMAVVEGRIYLLDAYKVPTRKDG
ECERETGTAVEAAITADNQYLLTGCDDRAIRVWHIDSGREVAVWQCHAQIPACLRTSNRR
VLVASACTALVLWIPNLKILEGLPPP
NT seq 981 nt   +upstreamnt  +downstreamnt
atgggccagcagttagctttggatgatagagtgctacggtccatgggtgtgggcaaatgc
ttcaaggacggtcaccagcgaataaactccatggacttctgccggacggaggacctgctg
gtgacgggcagcgatgatgattccatccgcgtgtacgatgtcgcgcggggcgtgccggtg
gacacgctccacagccgcaaatacggcgttcagaacgtgtgcttcacacacgaccccgcc
tgcattgtctacgcttctcgaaagctcaaacccacggaggcccatgcgctccgataccac
tccctccacatgaatcagtacctgagatacttcactggacataccgcccaggtgtgtgtc
aattccctgtgcttctcgcccaagaatgacacattcgtatcggcggcgcaggacaagact
gtacggctgtgggatgtacggacaaacatttgccagggctgtctgcaggtcccgggcaac
ccgaccgccaccatcgatcagcaaggactcgtgttcgcggtggctacggagtcgggcatc
atcaaactgtacgacttgaggtcgtacgacaagggaccctttgatacgttcacggagaag
ggcaaccccacgggttttgcggatatcaagttttcgaacaacggcaacttgctcatggcg
gtggtggagggccgaatatatttgctggacgcttacaaggtaccaacaaggaaggacggt
gaatgcgagcgcgagaccggtacggcagtggaggccgcgatcacagcggacaaccagtac
cttctgaccggatgtgacgaccgggcgattcgcgtgtggcacatcgacagcggtcgtgag
gtggcggtgtggcaatgtcacgcccagatacccgcctgcctgaggacgtccaatcggaga
gtgctggtggcgagtgcatgtacggcactagtgctgtggattcccaacctcaaaatcctg
gagggcctgccgccgccttga

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