Volvox carteri f. nagariensis: VOLCADRAFT_70034
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Entry
VOLCADRAFT_70034 CDS
T01330
Name
(RefSeq) DEAD/DEAH box helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
vcn
Volvox carteri f. nagariensis
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcn03019
]
VOLCADRAFT_70034
03041 Spliceosome [BR:
vcn03041
]
VOLCADRAFT_70034
03036 Chromosome and associated proteins [BR:
vcn03036
]
VOLCADRAFT_70034
Enzymes [BR:
vcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VOLCADRAFT_70034
Messenger RNA biogenesis [BR:
vcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
VOLCADRAFT_70034
mRNA cycle factors
Common to processing body (P body) and stress granule
VOLCADRAFT_70034
Spliceosome [BR:
vcn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
VOLCADRAFT_70034
Chromosome and associated proteins [BR:
vcn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
VOLCADRAFT_70034
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
Helicase_C_2
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-GeneID:
9621174
NCBI-ProteinID:
XP_002958882
JGI:
70034
UniProt:
D8UJN9
LinkDB
All DBs
Position
Unknown
AA seq
347 aa
AA seq
DB search
GSGKTLAYLLPVLAALMTRNRVQGSKNCASPEALVLVPTRELAEQVFSDVQLLLRGTHLK
ALAVHGGVSLADQVLAIRGSAGGVDLLVATPGRLLQLVEQRRAVRLNRLGVLVVDEADRL
MDLGMWPDLRRLLSQPGLPTARQTALVAASQLREHTPLAEAASELLRDALTIAVGDGSGT
SGVVRQHVELVSDEQKLGRLLELLAPGAAGGPAVVFTRSLTRAEEVARYLSGRGISVAML
HSDLTQAQRDEAMQCFRFGVTSVLVATALASRGLNFPDVDLVVNYDVPASLSVYLHQVGR
TGRGGRPGAATTLVTLSNRPSAPWLLDCLRRSGSPVPVWLEEMAAAA
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
ggcagcggcaagaccctggcctacctgctccctgtgctggccgccctgatgacccgcaac
agagtgcagggctccaagaactgcgcctccccggaggccctggtgctggtgcccactagg
gaactggcggaacaggtgttttctgacgtacagttattgctccgtggcactcacctcaag
gccctggcggttcacggtggggtatccctggcggatcaggtgctcgccatccggggcagc
gcgggcggtgtggatctgctggttgcaactcccggtcggttacttcagttggtggagcaa
cggcgggctgtacggctcaaccgtctgggtgtgttggtggttgatgaggcggaccggctc
atggacttgggcatgtggccggatctgcggcgactgctgtcccagcccggtctcccaact
gcccgccaaaccgccctggtggcggcctctcagctccgggagcacacccccctggcggag
gcggcgtcggagctgctgcgagatgcgttaacgatagcagttggcgacggcagcggaacc
agcggcgttgtacgacagcacgtggagctggtttcggacgagcagaagcttgggcgcctg
ctggagttgctggctcccggggctgcggggggccccgccgtggtgttcactcgcagcctg
actcgagctgaggaggtggcgaggtacctgtcggggcggggtattagcgtggcgatgttg
cacagcgatctgacccaggcccaacgagatgaggcgatgcaatgttttcgtttcggtgtg
acatctgtcttggtggccacagctctcgcgtcgcgggggctcaattttccggatgtcgac
ctggtggtgaattacgacgtgccggcgtcgttgagtgtgtatttgcaccaggttggtcgt
acaggccggggggggcgaccgggtgccgccactacgctcgtcactctctccaacaggccc
tccgcgccgtggcttctggactgcctgcggcgctccgggagccccgtgcccgtgtggttg
gaggagatggcggcggcagcc
DBGET
integrated database retrieval system
