Volvox carteri f. nagariensis: VOLCADRAFT_72779
Help
Entry
VOLCADRAFT_72779 CDS
T01330
Symbol
shmt2
Name
(RefSeq) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn00260
Glycine, serine and threonine metabolism
vcn00460
Cyanoamino acid metabolism
vcn00630
Glyoxylate and dicarboxylate metabolism
vcn00670
One carbon pool by folate
vcn01100
Metabolic pathways
vcn01110
Biosynthesis of secondary metabolites
vcn01200
Carbon metabolism
vcn01230
Biosynthesis of amino acids
vcn01240
Biosynthesis of cofactors
vcn04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
VOLCADRAFT_72779 (shmt2)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
VOLCADRAFT_72779 (shmt2)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
VOLCADRAFT_72779 (shmt2)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
VOLCADRAFT_72779 (shmt2)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
VOLCADRAFT_72779 (shmt2)
Enzymes [BR:
vcn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
VOLCADRAFT_72779 (shmt2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-GeneID:
9617767
NCBI-ProteinID:
XP_002946621
JGI:
72779
UniProt:
D8TJI5
LinkDB
All DBs
Position
Unknown
AA seq
490 aa
AA seq
DB search
MTGAEHDLGNGQHVTPAMAAVFPEAHTPLSVADPELFALIEDEKVRQWKGIELIASENFT
SLPVLEALGSCLTNKYSEGQPGARYYGGNENIDKIELLCKRRALEAFGLSPDEWGVNVQP
YSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGYYTQGKKISATSIFFESLPYKLNPQ
TGLVDMDKLEEKATEYRPKMIICGASAYPRDWDYQRFREVADKVGALLMVDMAHISGLVA
AGTLSSPFEYADIVTTTTHKSLRGPRAGMIFFRRGPKPVARLLKGDSEGAVYDFEDRINF
AVFPSLQGGPHNHQIGALAVALKYAATPEFKQYSNQVVANCRALANALLKRGYKLVTDGT
DNHLILWDLRPEGLTGSKMEKACDLCHITLNKNAVVGDLSAMNPGGVRIGTPAMTSRGLM
EPDFEEVAGFLHEVLEVCKEVQSTTGKAIKDFVKGLEGNTRIPDIRARVEAWASRFQMPG
FTVPQTAASS
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgacaggcgctgaacacgacctcggcaacggccagcatgtcacaccggctatggccgca
gttttccctgaggcccatacaccgctctctgttgccgatccggagctttttgcgttgatc
gaggacgagaaagtgcggcagtggaaaggtattgagctgattgcctccgagaacttcact
tctctgcctgttttggaggcgctcggctcttgcctgaccaacaagtattctgaggggcag
ccaggcgcacgttattacggtggaaatgagaatatcgataagattgaattgctttgcaag
cggcgcgctctggaagcctttggactgtccccagacgagtggggtgtcaatgtgcagcct
tactcgggcagcccagccaactttgcagtatacacagcactcctccaacctcatgaccgc
attatgggcttggacttgccaagtggcgggcacttgacgcatggttactatactcaagga
aagaagatcagtgcgacatctatcttctttgaatcgctcccgtacaagctcaaccctcag
acgggcctagtcgatatggacaaactggaggagaaagcgacggaatatcgccccaaaatg
atcatttgtggggcatcggcttatcctcgtgactgggattaccagcgtttccgcgaggtt
gcggacaaggtcggcgcactgctgatggtggacatggcccacataagcggcctggttgcg
gcgggcactctatcttcaccgtttgagtatgcagacatcgtcaccaccacgacgcacaag
tcgttgcgcggccctcgtgccggcatgatctttttccgccggggcccgaagccagtggcc
aggctgctgaagggcgactcggagggcgccgtgtacgatttcgaggatcgcatcaacttt
gcagtctttccttccctccagggaggtccgcacaaccaccagatcggtgcgctagccgtt
gcactaaagtacgcggcaacaccggaatttaagcaatactccaatcaggtggttgccaac
tgccgtgcgctggcgaacgcgctgctaaagcggggctataagttggtgacggacggcacc
gacaaccatctcatcctatgggacttgcggcctgaaggcttgacgggctccaaaatggag
aaagcctgtgacctgtgtcacatcacgctgaacaagaatgccgttgtcggtgacttgtcc
gctatgaacccgggtggcgtccgtattggcacacccgccatgacgtcgcgaggactgatg
gagcccgatttcgaggaggtggcgggctttctgcatgaagtcctggaggtttgcaaggag
gtccagagcactacgggcaaggcaattaaggactttgtcaagggactagagggcaacacc
cgcattcctgacatccgcgcgcgagttgaggcgtgggctagccgatttcagatgcccggg
tttactgtgccgcagacggcagcttcaagctga
DBGET
integrated database retrieval system